View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7289_low_4 (Length: 403)
Name: NF7289_low_4
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 80 - 386
Target Start/End: Complemental strand, 37504297 - 37503991
Alignment:
| Q |
80 |
gagggttattgttgatcatcccatatggtttatccgtactgtagggcttcaacgatcggtgatagattccattacagtcttcaaatacggaaaagacgaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37504297 |
gagggttattgttgatcatcccatatggttcatccgtacggtagggcttcaacgatcggtgatagattccattacagtcttcaaatacagaaaagacgaa |
37504198 |
T |
|
| Q |
180 |
ggactcgttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37504197 |
ggactcgttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcc |
37504098 |
T |
|
| Q |
280 |
cttgtattgatacttggcttagttcacacaagaattgtccgctgtgtcgtgcacctgtgatcaatgatgctgcagaggtgagtatcacagtcactgatca |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37504097 |
cttgtattgatacttggcttagttcacacaagaattgtccgctgtgtcgtgcacctgttatcaatgatgctgcagaggtgagtatcacagtcactgatca |
37503998 |
T |
|
| Q |
380 |
acttgat |
386 |
Q |
| |
|
||||||| |
|
|
| T |
37503997 |
acttgat |
37503991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37504376 - 37504329
Alignment:
| Q |
1 |
cgccggtattgtttgatgtccatggttatagagattctacaatttcaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37504376 |
cgccggtattgtttgatgtccatggttatagagattctacaatttcaa |
37504329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 27771725 - 27771620
Alignment:
| Q |
195 |
acagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatactt |
294 |
Q |
| |
|
||||| ||||| ||||||||| |||| |||||||| || || ||| | ||| |||| || | ||||| ||| | ||||||| | |||||||||||||| | |
|
|
| T |
27771725 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
27771626 |
T |
|
| Q |
295 |
ggctta |
300 |
Q |
| |
|
|||||| |
|
|
| T |
27771625 |
ggctta |
27771620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 37227974 - 37227852
Alignment:
| Q |
187 |
ttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtat |
286 |
Q |
| |
|
||||||| |||| |||||||||||| | |||| ||| |||| || |||| ||| ||| ||||||| ||||||| ||| ||||||||| | |||||||| |
|
|
| T |
37227974 |
ttgatggatcagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagacttttgccaaagtgtaaccatgcttttcatttaccttgtat |
37227875 |
T |
|
| Q |
287 |
tgatacttggcttagttcacaca |
309 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
37227874 |
tgatacttggcttagatcacaca |
37227852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 12617931 - 12617819
Alignment:
| Q |
186 |
gttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgta |
285 |
Q |
| |
|
||||||| ||||| ||||||||||||||| || |||||||| || |||||| | ||| |||| ||||| |||||||| ||||||||| | ||||||| |
|
|
| T |
12617931 |
gttgatgtaacagattgttctgtttgtctaaacgagtttcaagacgatgagagtattagacttttacctaaatgtagccatgcttttcatcttccttgta |
12617832 |
T |
|
| Q |
286 |
ttgatacttggct |
298 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
12617831 |
ttgatacatggct |
12617819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University