View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_low_6 (Length: 337)
Name: NF7289_low_6
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 25420075 - 25419749
Alignment:
| Q |
11 |
gtggtcgcgaattttggtacgcaaggcgagcatttctgaatagttaccatttgaatttggaaagagagaatgttagtttgaaggagaagctgaaaaggtt |
110 |
Q |
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| T |
25420075 |
gtggtcgcgaattttggtacgcaaggcgagcatttctgaatagttaccatttgaatttggaaagagagaatgttagtttgaaggagaagctgaaaaggtt |
25419976 |
T |
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| Q |
111 |
agtaaaggaagtgagtgaagctgctatgagagttgctttggatatgcgtagaaagatgcacaagagaaggcttggaataagggcttatagggtcacaatg |
210 |
Q |
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| T |
25419975 |
agtaaaggaagtgaatgaagctgctatgagagttgctttggatatgcgtagaaagatgcacaagagaaggcttggaataagggcttatagggtcacaatg |
25419876 |
T |
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| Q |
211 |
tctttgccatcaatgtttcttgttaccatgagatgctttatgccatggtttaacaaaaaaggagagtatgtaatgtaacatgtaatagtagtgtgctttt |
310 |
Q |
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| T |
25419875 |
tctttgccatctatgtttcttgttaccatgagatgctttatgccatggtttaacaaaaaaggagagtatgtaatgtaacatgtaatagtagtgtgctttt |
25419776 |
T |
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| Q |
311 |
aactgagaagaataataaaatgcagtt |
337 |
Q |
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| T |
25419775 |
aactgagaagaataataaaatgcagtt |
25419749 |
T |
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