View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_low_8 (Length: 314)
Name: NF7289_low_8
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 32036316 - 32036600
Alignment:
| Q |
25 |
tatggaaccaatgcatccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttca |
124 |
Q |
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| T |
32036316 |
tatggaaccaatgcatccgtaaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttca |
32036415 |
T |
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| Q |
125 |
atgagtatcttgctaacattgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036416 |
atgagtatcttgctaacattgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctg |
32036515 |
T |
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| Q |
225 |
gtgtgcatcttcttttcaataatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttatgcctttcatctcact |
309 |
Q |
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| T |
32036516 |
gtgtgcatcttcttttcaataatttgcaagctgcacaagatgagcttgaacgtggctcataaccctttatgcctttcatttcact |
32036600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 35 - 291
Target Start/End: Original strand, 35808693 - 35808949
Alignment:
| Q |
35 |
atgcatccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatct |
134 |
Q |
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| T |
35808693 |
atgcatccatagacagggtctctaagccttgcatcagcttcataagccaaagaattcacagtttcttccctttgttcctctggaacttcaatcagaatct |
35808792 |
T |
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| Q |
135 |
tgctaacattgcttgctccaaatactttgtgaactttggcgaatttcttgcactcattagaatggaagtaaggtgcaaataagcaatctggtgtgcatct |
234 |
Q |
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| T |
35808793 |
tgctcacattgcttgctccaaatactttgtgaactttcgcgaatttcttgcactcatcggagcgaaagtatggcgcaaatatacaatttggtatgcatct |
35808892 |
T |
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| Q |
235 |
tcttttcaataatttgcaagctgcacaagatgagcttgaacgtggctcataaccctt |
291 |
Q |
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| T |
35808893 |
tcttttcagaaatttgcaggctgcacaagaggaacttgaccttggttcataaccctt |
35808949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 600908 - 600801
Alignment:
| Q |
61 |
ccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaacattgcttgctccaaatact |
160 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||| | | |||||| | || || ||||||||||||||||| ||||||| | |
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| T |
600908 |
ccttgcttcagcttcataagctagagaattcactgtatcttctctttgatgaggtaagacttcatttagaattttgctaacattgcttgcaccaaatatt |
600809 |
T |
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| Q |
161 |
ttgtgaac |
168 |
Q |
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| T |
600808 |
ttgtgaac |
600801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 591351 - 591284
Alignment:
| Q |
41 |
ccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
108 |
Q |
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| T |
591351 |
ccatacactggatctttaatccttgcttcagcttcataagctagagaattcaccgtatcttctctttg |
591284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 12360671 - 12360798
Alignment:
| Q |
41 |
ccataaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttgtttttctggcacttcaatgagtatcttgctaa |
140 |
Q |
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| T |
12360671 |
ccataaactggatcttttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttactta |
12360770 |
T |
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| Q |
141 |
cattgcttgctccaaatactttgtgaac |
168 |
Q |
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|||||||||| ||||||| ||||||||| |
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| T |
12360771 |
cattgcttgcaccaaatattttgtgaac |
12360798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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