View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7290_low_1 (Length: 685)

Name: NF7290_low_1
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7290_low_1
NF7290_low_1
[»] chr8 (5 HSPs)
chr8 (14-291)||(9942803-9943080)
chr8 (423-480)||(15885625-15885682)
chr8 (536-581)||(18550958-18551003)
chr8 (339-388)||(35619686-35619735)
chr8 (372-436)||(19996208-19996272)
[»] chr1 (5 HSPs)
chr1 (14-389)||(18008154-18008528)
chr1 (45-84)||(30618430-30618469)
chr1 (536-581)||(9802199-9802244)
chr1 (522-581)||(37737187-37737246)
chr1 (17-184)||(40336403-40336570)
[»] chr3 (6 HSPs)
chr3 (15-453)||(12995848-12996286)
chr3 (516-584)||(8837910-8837978)
chr3 (342-442)||(18962895-18962995)
chr3 (117-206)||(31193044-31193133)
chr3 (117-206)||(52775180-52775269)
chr3 (516-584)||(55311846-55311914)
[»] scaffold0022 (1 HSPs)
scaffold0022 (178-448)||(168118-168388)
[»] scaffold0015 (2 HSPs)
scaffold0015 (192-455)||(23922-24185)
scaffold0015 (14-166)||(29831-29983)
[»] chr2 (4 HSPs)
chr2 (107-213)||(20040729-20040835)
chr2 (521-581)||(23682493-23682553)
chr2 (337-436)||(19914351-19914450)
chr2 (516-584)||(13132470-13132538)
[»] scaffold0006 (2 HSPs)
scaffold0006 (318-469)||(88728-88879)
scaffold0006 (87-156)||(90416-90485)
[»] chr7 (2 HSPs)
chr7 (522-581)||(3005176-3005235)
chr7 (117-206)||(16258670-16258759)
[»] scaffold0014 (1 HSPs)
scaffold0014 (117-206)||(93761-93850)
[»] chr6 (5 HSPs)
chr6 (117-206)||(26135592-26135681)
chr6 (342-448)||(6567836-6567942)
chr6 (544-585)||(14816679-14816720)
chr6 (330-439)||(34068818-34068927)
chr6 (330-442)||(28561950-28562062)
[»] chr4 (1 HSPs)
chr4 (117-206)||(13990067-13990156)
[»] chr5 (1 HSPs)
chr5 (516-584)||(26492009-26492077)
[»] scaffold0069 (1 HSPs)
scaffold0069 (318-442)||(9697-9821)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 9942803 - 9943080
Alignment:
Q  14 caaattgttgaatggttgtggaagcaaagctttggtgaaaaagtctgcaacttgatctttggatgagactgatagtaacttgaggatgttggcttgaagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9942803 caaattgttgaatggttgtggaagcaaagctttggtgaaaaagtctgcaacttgatctttggatgagactgatagtaacttgaggatgttggcttgaagt 9942902  T
Q  114 ttctctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatcagaataaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  9942903 ttctctcttacaatatggaagtctatctccaagtgctttgtacgctaatgaaagacaggattggcagctatgcggattgcaccctgattatcagaataaa 9943002  T
Q  214 tgaccggaactttgggacaattgatttgcaaatccttgaatacatataagatccattggagttcacaggaagctgcag 291  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9943003 tgacaggaactttgggacaattgatttgcaaatccttgaatacatataagatccattggagttcacaggaagctgcag 9943080  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 480
Target Start/End: Original strand, 15885625 - 15885682
Alignment:
Q  423 gcccagtcagcatctgaaaaaccttgtaactgaagagaagagtctttgtgaaaaaata 480  Q
    ||||| ||| |||||||||| |||||||| ||||||||||||| ||||  ||||||||    
T  15885625 gcccaatcaacatctgaaaacccttgtaagtgaagagaagagtgtttggaaaaaaata 15885682  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 581
Target Start/End: Original strand, 18550958 - 18551003
Alignment:
Q  536 tgagaaactgactcaattgttgagttataaaagtaatatcaggtct 581  Q
    ||||||| ||||||||||||||||| | |||||| |||||||||||    
T  18550958 tgagaaattgactcaattgttgagtaacaaaagtgatatcaggtct 18551003  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 35619735 - 35619686
Alignment:
Q  339 tgcttctttgttctccaagatataagtgacttgccaaggaagaaacattg 388  Q
    |||||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  35619735 tgcttctttgttctccaagaaataagtgattgaccaaggaagaagcattg 35619686  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 19996272 - 19996208
Alignment:
Q  372 ccaaggaagaaacattgtcgtgatatggatctcctagtatctttgcaacatgcccagtcagcatc 436  Q
    ||||| |||||||||||||  || || || || |||||||||||||| | |||||||||||||||    
T  19996272 ccaagaaagaaacattgtccagaaattgaccttctagtatctttgcatcctgcccagtcagcatc 19996208  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 18008528 - 18008154
Alignment:
Q  14 caaattgttgaatggttgtggaagcaaagctttggtgaaaaagtctgcaacttgatctttggatgagactgatagtaacttgaggatgttggcttgaagt 113  Q
    ||||||||||||||||||| |||||||||| || || || |||||||||| ||| ||||| | ||| || |  || |  |||||||| || | ||||||     
T  18008528 caaattgttgaatggttgtcgaagcaaagccttagtaaagaagtctgcaatttggtcttttgttgaaaccggcagaagtttgaggatatttgattgaagc 18008429  T
Q  114 ttctctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatcagaataaa 213  Q
    || ||||| ||||||||  | ||||||||||| | |||||| |  | ||| || || |||||   ||||||| | |||| ||| || |||||| |||| |    
T  18008428 ttttctctgacaatatgacaatctatctccaaattctttgttctttcatggaacactggatttgaagctatgtgaattgaactttggttatcacaataga 18008329  T
Q  214 tgaccggaactttgggacaattgatttgcaaatccttgaatacatataagatccattggagttcacaggaagctgcagctagagctctgtattctgcgtc 313  Q
    |||| ||||| ||  ||||  ||| ||||  ||| || | ||||||||  || ||||| |||||||| ||||||||| | | || ||| |||||||| ||    
T  18008328 tgacaggaaccttacgacatgtgacttgccgatcttttagtacatatagaatacattgaagttcacatgaagctgcaaccaaagttctatattctgcttc 18008229  T
Q  314 tgaagatgacttacttacagtcagttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgt 389  Q
    |||||||||||| |||||| |||  || ||||||||||||||||| || ||||| || || |||||||||||||||    
T  18008228 tgaagatgacttgcttacattcaactgtttctttgttctccaagaaatgagtgaattacc-aggaagaaacattgt 18008154  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 30618430 - 30618469
Alignment:
Q  45 ttggtgaaaaagtctgcaacttgatctttggatgagactg 84  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  30618430 ttggtgaaaaagtctgcaacttgatctttggaggagactg 30618469  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 581
Target Start/End: Original strand, 9802199 - 9802244
Alignment:
Q  536 tgagaaactgactcaattgttgagttataaaagtaatatcaggtct 581  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||    
T  9802199 tgagaaattgactcaattgttgagtaatgaaagtaatatcaggtct 9802244  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 581
Target Start/End: Original strand, 37737187 - 37737246
Alignment:
Q  522 ttgtgttggaatgctgagaaactgactcaattgttgagttataaaagtaatatcaggtct 581  Q
    |||||||||  || ||||||| ||||||||||||||  ||||||| ||||||||||||||    
T  37737187 ttgtgttggcttggtgagaaattgactcaattgttgtattataaaggtaatatcaggtct 37737246  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 40336570 - 40336403
Alignment:
Q  17 attgttgaatggttgtggaagcaaagctttggtgaaaaagtctgcaacttgatctttggatgagactgatagtaacttgaggatgttggcttgaagtttc 116  Q
    ||||||||||||||| ||||| | |||||| ||||| ||||   ||| ||| |||||||| |||| ||  || || ||||| |||||||| ||||||||     
T  40336570 attgttgaatggttgaggaagaagagctttagtgaagaagttaacaatttgctctttggaggagattggcagaaatttgagaatgttggcctgaagtttt 40336471  T
Q  117 tctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctat 184  Q
    || | || ||||||| | || ||||| ||||| ||||| |  | |||||| ||||||||  |||||||    
T  40336470 tcacgtataatatggcaatcaatctctaagtgttttgtgcgttcatgaaacacaggattagcagctat 40336403  T

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Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 15 - 453
Target Start/End: Complemental strand, 12996286 - 12995848
Alignment:
Q  15 aaattgttgaatggttgtggaagcaaagctttggtgaaaaagtctgcaacttgatctttggatgagactgatagtaacttgaggatgttggcttgaagtt 114  Q
    |||||||||||||| || ||||| |  |||||||| || ||||||||||  |||||||| || || | |  ||| || ||||||||||| ||   |||||    
T  12996286 aaattgttgaatggctgaggaagtagtgctttggtaaagaagtctgcaagctgatcttttgaggaaagtagtagcaatttgaggatgttagccaaaagtt 12996187  T
Q  115 tctctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatcagaataaat 214  Q
    | |||||||| |||||  | || || ||||| || ||  | | |  |||||| ||||||||  ||| |||  |||  ||||||||||||||| |||| ||    
T  12996186 tttctcttactatatgacaatcaatatccaaatgtttgttgcgcccatgaaacacaggattagcagttatatggagggcactctgattatcacaatagat 12996087  T
Q  215 gaccggaactttgggacaattgatttgcaaatccttgaatacatataagatccattggagttcacaggaagctgcagctagagctctgtattctgcgtct 314  Q
    |||  ||| |||||  || |||| ||| |||||||| |  |||||||  |||||||| |||||||| |||||  | ||||| ||||| |||||||| |||    
T  12996086 gactagaattttggagcagttgagttgtaaatccttaaggacatatataatccattgcagttcacaagaagcaactgctagggctctatattctgcttct 12995987  T
Q  315 gaagatgacttacttacagtcagttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctt 414  Q
    ||||| |||||||| |  || ||||||||||| || | ||| || || || |||||||| | |||||||||||| |  ||||||||||| |||||||| |    
T  12995986 gaagacgacttactaattgttagttgcttcttagtgcgccatgaaatcagagacttgcctaagaagaaacattggccagatatggatcttctagtatcct 12995887  T
Q  415 tgcaacatgcccagtcagcatctgaaaaaccttgtaact 453  Q
    | || | |  ||||||||||||||| || ||||| ||||    
T  12995886 tacagcctatccagtcagcatctgagaatccttgcaact 12995848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 8837978 - 8837910
Alignment:
Q  516 atgagcttgtgttggaatgctgagaaactgactcaattgttgagttataaaagtaatatcaggtctggt 584  Q
    ||||| ||| |||||  |||| |||||||||||||||||||| || ||||||||||| |||||||||||    
T  8837978 atgagtttgagttggtttgctaagaaactgactcaattgttgggtaataaaagtaatgtcaggtctggt 8837910  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 442
Target Start/End: Original strand, 18962895 - 18962995
Alignment:
Q  342 ttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctttgcaacatgcccagtcagcatctgaaa 441  Q
    ||||| ||||||||||||||||| ||||| ||||| || |||||||| |  || |||||||| |||| |||| | || | |||| |||||||||||||||    
T  18962895 ttcttagttctccaagatataagggacttcccaagaaaaaaacattgaccagaaatggatcttctagaatctatacaccctgcctagtcagcatctgaaa 18962994  T
Q  442 a 442  Q
    |    
T  18962995 a 18962995  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31193044 - 31193133
Alignment:
Q  117 tctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatca 206  Q
    ||||| |||| |||| | |||||||||||||| ||||| | || |||||| |||||||| ||||| ||  | ||||||||||||||||||    
T  31193044 tctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatca 31193133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 52775269 - 52775180
Alignment:
Q  117 tctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatca 206  Q
    ||||| |||| |||| | |||||||||||||| ||||| | || |||||| |||||||| ||||| ||  | ||||||||||||||||||    
T  52775269 tctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatca 52775180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 55311914 - 55311846
Alignment:
Q  516 atgagcttgtgttggaatgctgagaaactgactcaattgttgagttataaaagtaatatcaggtctggt 584  Q
    ||||| ||| |||||  |||| |||||| ||||||||||||| || || |||||||| |||||||||||    
T  55311914 atgagtttgagttggtttgctaagaaacagactcaattgttgggtaatgaaagtaatgtcaggtctggt 55311846  T

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Target: scaffold0022 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 178 - 448
Target Start/End: Original strand, 168118 - 168388
Alignment:
Q  178 cagctatgcggattgcactctgattatcagaataaatgaccggaactttgggacaattgatttgcaaatccttgaatacatataagatccattggagttc 277  Q
    |||||||| | | |||||||||||| ||| |||| || || |||| ||||| ||| ||||| ||||||||||  |  ||||| |  ||| |||| |||||    
T  168118 cagctatgtgaagtgcactctgattgtcacaatagataactggaattttggaacatttgatctgcaaatcctgaagaacataaagaatcaattgaagttc 168217  T
Q  278 acaggaagctgcagctagagctctgtattctgcgtctgaagatgacttacttacagtcagttgcttctttgttctccaagatataagtgacttgccaagg 377  Q
    ||| ||||| || || | |||| |||| ||||| || |||||||| ||||  ||||||||||| ||||| |||||||| || || || ||||| || |||    
T  168218 acatgaagcagctgccaaagctttgtactctgcttcagaagatgatttaccaacagtcagttgtttcttggttctccatgaaatgagagactttcctagg 168317  T
Q  378 aagaaacattgtcgtgatatggatctcctagtatctttgcaacatgcccagtcagcatctgaaaaaccttg 448  Q
    ||||||||||| |  || ||  |||| || |||||| || ||| |||| |||||||||||||||| |||||    
T  168318 aagaaacattgaccagagattaatcttctggtatctctgaaacctgcctagtcagcatctgaaaagccttg 168388  T

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Target: scaffold0015 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 192 - 455
Target Start/End: Complemental strand, 24185 - 23922
Alignment:
Q  192 gcactctgattatcagaataaatgaccggaactttgggacaattgatttgcaaatccttgaatacatataagatccattggagttcacaggaagctgcag 291  Q
    ||||||||||||||| | |||||||| ||||||||||  ||| ||| ||| |||||||| |  ||||| |  |||||||| |||||||| || || || |    
T  24185 gcactctgattatcatagtaaatgactggaactttggagcaagtgagttgtaaatccttaagcacataaagaatccattgcagttcacaagaggcagctg 24086  T
Q  292 ctagagctctgtattctgcgtctgaagatgacttacttacagtcagttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcg 391  Q
    |||  ||||| || ||||| |||||| |||||||  | |  |  |||| |||||| |||||||| ||||| || |||||||| | ||||||||||||||     
T  24085 ctaaggctctatactctgcttctgaatatgacttgttgattgctagtttcttcttagttctccatgatatgagagacttgcctaagaagaaacattgtcc 23986  T
Q  392 tgatatggatctcctagtatctttgcaacatgcccagtcagcatctgaaaaaccttgtaactga 455  Q
     ||||| ||||| ||||||||  | || | ||| |||||| ||||||||||  |||||| ||||    
T  23985 agatatagatcttctagtatccctacatcctgcacagtcaacatctgaaaagtcttgtagctga 23922  T

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Target: scaffold0015; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 29983 - 29831
Alignment:
Q  14 caaattgttgaatggttgtggaagcaaagctttggtgaaaaagtctgcaacttgatctttggatgagactgatagtaacttgaggatgttggcttgaagt 113  Q
    |||||||||||||  ||| ||||| || |||||||| || || | ||||| ||||||||| ||||| ||||  ||||| ||||| || || ||  |||||    
T  29983 caaattgttgaataattgaggaagtaatgctttggtaaagaaatttgcaatttgatcttttgatgaaactggcagtaatttgagaatattagccggaagt 29884  T
Q  114 ttctctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaa 166  Q
    || ||||| || |||||  | || |||||||| ||||| |||| || ||||||    
T  29883 ttttctctcactatatgataatcaatctccaaatgcttggtacgctcatgaaa 29831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 20040729 - 20040835
Alignment:
Q  107 ttgaagtttctctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatca 206  Q
    ||||||||||||||| |||| |||| |||| |||||||| || ||||| | || |||||| ||||| ||||| || ||| | ||||| ||||||||||||    
T  20040729 ttgaagtttctctctaacaaaatggcagtcaatctccaaatgttttgttctctcatgaaatacagggttgcctgcaatgtgaattgcgctctgattatca 20040828  T
Q  207 gaataaa 213  Q
     ||||||    
T  20040829 caataaa 20040835  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 581
Target Start/End: Complemental strand, 23682553 - 23682493
Alignment:
Q  521 cttgtgttggaatgctgagaaactgactcaattgttgagttataaaagtaatatcaggtct 581  Q
    ||||||||||  || ||||||| |||||||||||||| |||||||| ||||||||||||||    
T  23682553 cttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtct 23682493  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 436
Target Start/End: Original strand, 19914351 - 19914450
Alignment:
Q  337 gttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctttgcaacatgcccagtcagcatc 436  Q
    |||||||||||||||||||||||||||| || |  || || ||||| || |||| |||||| || | ||||||||| || || | |||||||||| ||||    
T  19914351 gttgcttctttgttctccaagatataagggattgtcccagaaagaagcaatgtcctgatatagaacacctagtatccttacaccctgcccagtcaacatc 19914450  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 13132538 - 13132470
Alignment:
Q  516 atgagcttgtgttggaatgctgagaaactgactcaattgttgagttataaaagtaatatcaggtctggt 584  Q
    ||||| ||| |||||  |||| ||||||||||||||||| || || || |||||||| |||||||||||    
T  13132538 atgagtttgagttggtttgctaagaaactgactcaattgctgggtaatgaaagtaatgtcaggtctggt 13132470  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 469
Target Start/End: Complemental strand, 88879 - 88728
Alignment:
Q  318 gatgacttacttacagtcagttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctttgc 417  Q
    |||||||| || ||| ||| || |||||| || ||||| || ||||| |||||||| | ||||||||| ||||   | |||||  | |||||||||||||    
T  88879 gatgacttcctaacaatcaattacttcttagtcctccatgaaataagagacttgcctaagaagaaacactgtccaaaaatggactttctagtatctttgc 88780  T
Q  418 aacatgcccagtcagcatctgaaaaaccttgtaactgaagagaagagtcttt 469  Q
    | | |||||| || ||||||||||| || || |||||||||| || ||||||    
T  88779 agcctgcccaatctgcatctgaaaatccatgcaactgaagagtagcgtcttt 88728  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 90485 - 90416
Alignment:
Q  87 agtaacttgaggatgttggcttgaagtttctctcttacaatatggaagtctatctccaagtgctttgtac 156  Q
    |||| |||||| |||||||| ||||| |||||||||||||||||  | ||||| || |||||||| ||||    
T  90485 agtagcttgagaatgttggcctgaagcttctctcttacaatatgacaatctatttctaagtgcttggtac 90416  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 581
Target Start/End: Complemental strand, 3005235 - 3005176
Alignment:
Q  522 ttgtgttggaatgctgagaaactgactcaattgttgagttataaaagtaatatcaggtct 581  Q
    |||||||||  || ||||||| |||||||||||||| |||||||| ||||||||||||||    
T  3005235 ttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtct 3005176  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 16258759 - 16258670
Alignment:
Q  117 tctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatca 206  Q
    ||||| |||| |||| | |||||||||||||| ||||| | || |||||| ||| |||| ||||| ||  | ||||||||||||||||||    
T  16258759 tctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacatgattcccagcaatatgtattgcactctgattatca 16258670  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 93761 - 93850
Alignment:
Q  117 tctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatca 206  Q
    ||||| |||| |||| | |||||||||||||| ||||| | || |||||| |||||||| ||||| ||  | ||||||||||||||||||    
T  93761 tctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatca 93850  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 26135681 - 26135592
Alignment:
Q  117 tctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatca 206  Q
    ||||| |||| |||| | |||||||||||||| ||||| | || |||||| |||||||| ||||| ||  | ||||||||||||||||||    
T  26135681 tctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatca 26135592  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 448
Target Start/End: Original strand, 6567836 - 6567942
Alignment:
Q  342 ttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctttgcaacatgcccagtcagcatctgaaa 441  Q
    ||||| ||||||||||| || ||||| ||||| | |||||| ||||||  ||| || ||||| || |||||||| || | |||| |||| |||| |||||    
T  6567836 ttcttggttctccaagaaattagtgatttgcctatgaagaagcattgtattgaaatagatcttctggtatctttacatcctgcctagtctgcatatgaaa 6567935  T
Q  442 aaccttg 448  Q
    |||||||    
T  6567936 aaccttg 6567942  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 585
Target Start/End: Complemental strand, 14816720 - 14816679
Alignment:
Q  544 tgactcaattgttgagttataaaagtaatatcaggtctggta 585  Q
    ||||||||||||||||| || ||||| |||||||||||||||    
T  14816720 tgactcaattgttgagtgatgaaagtgatatcaggtctggta 14816679  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 439
Target Start/End: Complemental strand, 34068927 - 34068818
Alignment:
Q  330 acagtcagttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctttgcaacatgcccagt 429  Q
    ||||| |||||||| || ||||||||||| ||||| || |||||||| ||||| || || | ||| ||||||||||| | ||||   || |  |||||||    
T  34068927 acagttagttgctttttggttctccaagaaataagggatttgccaagaaagaagcactggcctgaaatggatctcctggaatctaaacatccagcccagt 34068828  T
Q  430 cagcatctga 439  Q
    ||||||||||    
T  34068827 cagcatctga 34068818  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 28562062 - 28561950
Alignment:
Q  330 acagtcagttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctttgcaacatgcccagt 429  Q
    ||||||| ||| ||||| ||||||||||| |||||||| || ||||| |||||| |||| |  || || |||||  ||| |||| | || | ||||||||    
T  28562062 acagtcaattgtttcttagttctccaagagataagtgatttcccaagaaagaaaaattgaccagaaatagatcttttagaatctatacaccctgcccagt 28561963  T
Q  430 cagcatctgaaaa 442  Q
    ||||| |||||||    
T  28561962 cagcaactgaaaa 28561950  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 13990156 - 13990067
Alignment:
Q  117 tctcttacaatatggaagtctatctccaagtgctttgtacactaatgaaagacaggattgccagctatgcggattgcactctgattatca 206  Q
    ||||| |||| |||| | |||||||||||||| ||||| | || |||||| |||||||| ||||| ||  | ||||||||||||||||||    
T  13990156 tctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatca 13990067  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 26492077 - 26492009
Alignment:
Q  516 atgagcttgtgttggaatgctgagaaactgactcaattgttgagttataaaagtaatatcaggtctggt 584  Q
    ||||| ||| |||||  |||| |||||||||||||||||||| || || |||||||| |||||||||||    
T  26492077 atgagtttgagttggtttgctaagaaactgactcaattgttgggtaatgaaagtaatgtcaggtctggt 26492009  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 442
Target Start/End: Complemental strand, 9821 - 9697
Alignment:
Q  318 gatgacttacttacagtcagttgcttctttgttctccaagatataagtgacttgccaaggaagaaacattgtcgtgatatggatctcctagtatctttgc 417  Q
    |||||||| || ||| ||| ||||||||| || ||||| || ||||| ||||| || | ||| ||||| ||||   | |||||  | |||||||||||||    
T  9821 gatgacttcctaacaatcaattgcttcttagtcctccatgaaataagagactttcctaagaaaaaacactgtccataaatggactttctagtatctttgc 9722  T
Q  418 aacatgcccagtcagcatctgaaaa 442  Q
    | | ||||||||| |||||||||||    
T  9721 agcctgcccagtctgcatctgaaaa 9697  T

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