View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7290_low_10 (Length: 331)
Name: NF7290_low_10
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7290_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 18253046 - 18252748
Alignment:
| Q |
18 |
gttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtg |
117 |
Q |
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| T |
18253046 |
gttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtg |
18252947 |
T |
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| Q |
118 |
gaataacaccaccgacggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggcttt |
217 |
Q |
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| T |
18252946 |
gaataacaccaccaacggctatatctaaacgagcaatggaaattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggcttt |
18252847 |
T |
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| Q |
218 |
gataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggcc |
316 |
Q |
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| T |
18252846 |
gataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggcc |
18252748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 18256522 - 18256820
Alignment:
| Q |
18 |
gttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18256522 |
gttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtg |
18256621 |
T |
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| Q |
118 |
gaataacaccaccgacggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggcttt |
217 |
Q |
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| T |
18256622 |
gaataacaccacctacggctatatctaaacgtgcaatggatattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggcttt |
18256721 |
T |
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| Q |
218 |
gataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggcc |
316 |
Q |
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| T |
18256722 |
gataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggcc |
18256820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 18245942 - 18245644
Alignment:
| Q |
18 |
gttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtg |
117 |
Q |
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||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
18245942 |
gttttaatgtaaacagtgttggcagaggaaacaaaaccagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtg |
18245843 |
T |
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| Q |
118 |
gaataacaccaccgacggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggcttt |
217 |
Q |
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||||||| ||||| |||||| |||||||||||||| ||| |||||||||||||||| ||| | |||||| |||| | ||||| ||| ||||| ||||| |
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| T |
18245842 |
gaataactccacctgcggctaaatctaaacgcgcaagggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgcttt |
18245743 |
T |
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| Q |
218 |
gataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggcc |
316 |
Q |
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||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| || ||||| |
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| T |
18245742 |
gataatgtttgaggtgtttccggctgcagctaggccgtggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggcc |
18245644 |
T |
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