View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7290_low_14 (Length: 306)
Name: NF7290_low_14
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7290_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28498543 - 28498454
Alignment:
| Q |
1 |
aataacaaaagtatgatcgaaaattatcataataattgtcctaaaatgatagttttaatatcatctctaaacatttttgtttaatctata |
90 |
Q |
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| T |
28498543 |
aataacaaaagtatgatcgaacattatcataaaaattgtcctaaaatgataattttaatatcatctctaaacatttttgtttaatctata |
28498454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29810954 - 29810865
Alignment:
| Q |
1 |
aataacaaaagtatgatcgaaaattatcataataattgtcctaaaatgatagttttaatatcatctctaaacatttttgtttaatctata |
90 |
Q |
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| T |
29810954 |
aataacaaaagtatgatcgaacattatcataaaaattgtcctaaaatgataattttaatatcatctctaaacatttttgtttaatctata |
29810865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 288
Target Start/End: Complemental strand, 29697846 - 29697691
Alignment:
| Q |
126 |
tactgacacaagcacgtcccagcattttaacatttctgcttaatc---aatatactgacaa--gcatgtcccactttcttgactttagatactccaaaag |
220 |
Q |
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| T |
29697846 |
tactgacacaagcgcgtcccaacagtttaacatttctgcttgatcaataatatactgacaagtgtgtgtcccaccttcttgactttagatactcc-aaag |
29697748 |
T |
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| Q |
221 |
tctttcttaagttcagcagtacagtcattcactcatcctagctcaattttatccaaacaactgttctt |
288 |
Q |
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| T |
29697747 |
tctttttgaagttca-----------ctacactcatcctagctcaattttatccaaacaactgttctt |
29697691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 28481754 - 28481710
Alignment:
| Q |
174 |
atactgacaagcatgtcccactttcttgactttagatactccaaa |
218 |
Q |
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| T |
28481754 |
atactgacaagcgtgtcccactttcatgactttagatacttcaaa |
28481710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 29794177 - 29794133
Alignment:
| Q |
174 |
atactgacaagcatgtcccactttcttgactttagatactccaaa |
218 |
Q |
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| T |
29794177 |
atactgacaagcgtgtcccactttcatgactttagatacttcaaa |
29794133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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