View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7290_low_16 (Length: 274)
Name: NF7290_low_16
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7290_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 42116678 - 42116414
Alignment:
| Q |
14 |
atattgaggtcgagttgtgtgcaacaatgttccttccttgaaagggccatatgtggatgattttaccttcccctgcgtccgttggacgacatctgatagt |
113 |
Q |
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| T |
42116678 |
atattgaggtcgagttgtgtgcaacaatgttccttccttgaaagggccatatgtggatgattttaccttcccctgcgtaccttggacgacacctaatagt |
42116579 |
T |
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| Q |
114 |
tcagacattccaagattaattgttgcatattttttgc--------------------attgcaagattactacatctttttaaaatggattaggcattta |
193 |
Q |
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| T |
42116578 |
tcagacattccaagattaattgttgcatattttttgcattccaagaatatttttggtattacaagattactacatctttttcaaatggattaggcattta |
42116479 |
T |
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| Q |
194 |
tagattacttgttgcatattttacttgaagacatacagcgtctatttatgaagacatggtggtag |
258 |
Q |
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| T |
42116478 |
tagattacttgttgcatattttacttgaagacatacaacgtctatttatgaagacatggtggtag |
42116414 |
T |
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