View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7290_low_20 (Length: 247)
Name: NF7290_low_20
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7290_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42116805 - 42117049
Alignment:
| Q |
1 |
acaaataattacctacatgagagtcgagtattgagtcaactgcattctatgggaattagtcacctcacccatgtgtaggctacagcggaatccctgtatg |
100 |
Q |
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| T |
42116805 |
acaaataattatctacatgagagtcaagtattgagtcaactgcattctatggggattagtcacctcacccatgtgtaggctacagcggaatccctgtatg |
42116904 |
T |
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| Q |
101 |
accactgattaattgtagtgagatcccagaagtactctaggtacaacacgtcgacgtactgcagactcttatcagtaaat---atgatgcatcaaacgag |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42116905 |
accactgattaattgtagtgagatcccagaagtgctctaggtacaacacgtcgacgtactgcagactcttatcagtaaatatgatgatgcatcaaacgag |
42117004 |
T |
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| Q |
198 |
gtaaaatgataagc-cttatacacttagtcatatgcccatctctg |
241 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42117005 |
gtaaaatgataagctcttatacacttagtcatatgcccatctctg |
42117049 |
T |
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