View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7290_low_22 (Length: 217)

Name: NF7290_low_22
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7290_low_22
NF7290_low_22
[»] chr8 (8 HSPs)
chr8 (1-128)||(11345057-11345184)
chr8 (25-128)||(11339399-11339502)
chr8 (125-201)||(11345219-11345295)
chr8 (31-128)||(11358965-11359062)
chr8 (21-128)||(11338552-11338659)
chr8 (125-201)||(11338694-11338770)
chr8 (125-201)||(11359097-11359173)
chr8 (125-198)||(11339537-11339610)
[»] chr7 (3 HSPs)
chr7 (21-128)||(24031242-24031349)
chr7 (21-120)||(24021763-24021862)
chr7 (58-121)||(22063636-22063699)
[»] chr6 (5 HSPs)
chr6 (22-128)||(19746671-19746777)
chr6 (26-125)||(33576160-33576259)
chr6 (27-115)||(33568984-33569072)
chr6 (125-201)||(19746812-19746888)
chr6 (28-115)||(5979027-5979114)
[»] chr4 (2 HSPs)
chr4 (36-128)||(23840662-23840754)
chr4 (36-115)||(23847168-23847247)
[»] chr3 (1 HSPs)
chr3 (21-120)||(36340110-36340209)
[»] scaffold0707 (1 HSPs)
scaffold0707 (26-115)||(5378-5467)
[»] chr5 (3 HSPs)
chr5 (44-115)||(23086782-23086853)
chr5 (96-128)||(29597603-29597635)
chr5 (61-121)||(29647670-29647730)
[»] chr1 (1 HSPs)
chr1 (51-120)||(50645491-50645560)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 1e-61; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 11345057 - 11345184
Alignment:
Q  1 ataccccgtctaattgaagaaaggttatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  11345057 ataccccgtctaattgaagaaaggttatgcatttgaagattaaagtagtcaattctaaataattgagtccaagattcttgaaatccaaactcttccattt 11345156  T
Q  101 gccatataacaaattgagtttccttgaa 128  Q
    ||||||||||||||||||||||||||||    
T  11345157 gccatataacaaattgagtttccttgaa 11345184  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 11339399 - 11339502
Alignment:
Q  25 ttatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtttcct 124  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||   |||||||||||||||||||||||||||||    
T  11339399 ttatgcatttcaagattaaagtagtcaattctaaataattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaattgagtttcct 11339498  T
Q  125 tgaa 128  Q
    ||||    
T  11339499 tgaa 11339502  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 11345219 - 11345295
Alignment:
Q  125 tgaagagttggctgaaagctcgggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaag 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11345219 tgaagagttggctgaaagcttgggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaag 11345295  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 11358965 - 11359062
Alignment:
Q  31 atttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtttccttgaa 128  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  11358965 atttcaagattagagtagtcaattctaaataattgagtccaagattcttgaaatcccatctctttcatttgccatataacaaattgagtttccttgaa 11359062  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 11338552 - 11338659
Alignment:
Q  21 aaggttatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtt 120  Q
    ||||||||| || | |||||||||||||| || |||||||||||||  |||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  11338552 aaggttatgaatatcaagattaaagtagttaactctaaataattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaattcagtt 11338651  T
Q  121 tccttgaa 128  Q
    | ||||||    
T  11338652 tgcttgaa 11338659  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 11338694 - 11338770
Alignment:
Q  125 tgaagagttggctgaaagctcgggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaag 201  Q
    |||||||||||||||||||  |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  11338694 tgaagagttggctgaaagcatgggatctcatcaagaccagaaggcaaacaaaattgcatgtatgtctcagttgaaag 11338770  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 11359097 - 11359173
Alignment:
Q  125 tgaagagttggctgaaagctcgggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaag 201  Q
    ||||||||||||| |||||  |||||||||||||||||| ||||||   ||||||||||||||| ||||||||||||    
T  11359097 tgaagagttggctaaaagcatgggacctcatcaaaaccagaaggcagtgaaaattgcatgtatgcctcagttgaaag 11359173  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 11339537 - 11339610
Alignment:
Q  125 tgaagagttggctgaaagctcgggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttga 198  Q
    ||||||||||||||||||   || ||||||||||||||| |||| |||||||||||||| ||||||||| ||||    
T  11339537 tgaagagttggctgaaagtagggtacctcatcaaaaccagaaggtaaacaaaattgcatatatgtctcaattga 11339610  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 24031349 - 24031242
Alignment:
Q  21 aaggttatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtt 120  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||| ||||||| ||| ||| ||||||||| | ||||| |||||| ||||||| ||||    
T  24031349 aaggttatgcatttcaagattaaagtagccaattctaaatagttgagtccaagactcttgaactccaaactcattcattttccatatgacaaattcagtt 24031250  T
Q  121 tccttgaa 128  Q
    | ||||||    
T  24031249 ttcttgaa 24031242  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 24021862 - 24021763
Alignment:
Q  21 aaggttatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtt 120  Q
    |||||||||||||| ||||| ||||||  |||||||||||| | || ||||||| ||| ||| ||||||||| | ||||| ||| |||||||||| ||||    
T  24021862 aaggttatgcatttcaagatcaaagtatccaattctaaatagtcgagtccaagactctcgaattccaaactcattcattttccaaataacaaattcagtt 24021763  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 22063699 - 22063636
Alignment:
Q  58 aataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagttt 121  Q
    ||||| ||| ||||||| ||| |||||||||| || | |||||||||||||||||| |||||||    
T  22063699 aataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 19746671 - 19746777
Alignment:
Q  22 aggttatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagttt 121  Q
    ||||||| ||||| |||||||||||||||||||||||||||   | ||||||| ||| ||| ||||||||  | |||||||||||||||||||| ||||     
T  19746671 aggttatacatttcaagattaaagtagtcaattctaaataacaaagtccaagactcttgaactccaaacttcttcatttgccatataacaaattcagttc 19746770  T
Q  122 ccttgaa 128  Q
    |||||||    
T  19746771 ccttgaa 19746777  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 33576259 - 33576160
Alignment:
Q  26 tatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtttcctt 125  Q
    |||| ||||||||||||| ||| |||||||||||||| ||| ||||||| ||| ||| ||||||||| | |||   |||||||||||||| |||| ||||    
T  33576259 tatgtatttgaagattaacgtattcaattctaaataactgagtccaagactcttgaactccaaactccttcatcatccatataacaaattcagttccctt 33576160  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 33569072 - 33568984
Alignment:
Q  27 atgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaatt 115  Q
    |||||||||||||||||  || |||||||||||||| ||||||||||| ||  ||| ||||||||| | ||| | |||||| |||||||    
T  33569072 atgcatttgaagattaacatattcaattctaaataactgactccaagactcgtgaactccaaactcattcatcttccatatgacaaatt 33568984  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 19746812 - 19746888
Alignment:
Q  125 tgaagagttggctgaaagctcgggacctcatcaaaaccaaaaggcaaacaaaattgcatgtatgtctcagttgaaag 201  Q
    ||||||||||||||||||   ||||| |||||||||||||| ||||   |||||||  ||||||||||||| |||||    
T  19746812 tgaagagttggctgaaagtgtgggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaag 19746888  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 5979114 - 5979027
Alignment:
Q  28 tgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaatt 115  Q
    ||||||||||||||||  || |||| ||||||||| ||| ||||||| ||| | | ||||||||| | |||  |||||||||||||||    
T  5979114 tgcatttgaagattaacatattcaaatctaaataactgagtccaagactcttggactccaaactccttcatcagccatataacaaatt 5979027  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 23840754 - 23840662
Alignment:
Q  36 aagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtttccttgaa 128  Q
    ||||||||||||||||||||||||||||||| ||||||| ||  |||  ||||||| || | |||| ||||||||||||| ||||| ||||||    
T  23840754 aagattaaagtagtcaattctaaataattgagtccaagactcctgaaccccaaactatttcctttgtcatataacaaattcagttttcttgaa 23840662  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 23847168 - 23847247
Alignment:
Q  36 aagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaatt 115  Q
    ||||||||||||||||||||||||||| ||| || |||| ||| |||  | |||||||| |||||||||| |||||||||    
T  23847168 aagattaaagtagtcaattctaaataactgagtctaagactcttgaaccctaaactctttcatttgccatgtaacaaatt 23847247  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 36340209 - 36340110
Alignment:
Q  21 aaggttatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtt 120  Q
    ||||||||| ||||||||||||| ||| | |||||||||||| ||| ||||||| ||| || |||||||||| | ||| |||||||| ||||||| ||||    
T  36340209 aaggttatggatttgaagattaatgtatttaattctaaataactgagtccaagactcttgagatccaaactccttcatctgccatatcacaaattcagtt 36340110  T

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Target: scaffold0707 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 5467 - 5378
Alignment:
Q  26 tatgcatttgaagattaaagtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaatt 115  Q
    |||| ||||||||||||| ||| |||||||||||||| ||||||||||| ||  ||| ||||||||| | ||| | |||||| |||||||    
T  5467 tatgtatttgaagattaacgtattcaattctaaataactgactccaagactcgtgaactccaaactcattcatcttccatatgacaaatt 5378  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 23086853 - 23086782
Alignment:
Q  44 agtagtcaattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaatt 115  Q
    ||||||| |||||||| || ||| ||||||| ||| ||| ||||||||| | ||| ||||||||||||||||    
T  23086853 agtagtcgattctaaacaactgagtccaagactcttgaactccaaactccttcatctgccatataacaaatt 23086782  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 29597603 - 29597635
Alignment:
Q  96 catttgccatataacaaattgagtttccttgaa 128  Q
    |||||||||||||||||| ||||||||||||||    
T  29597603 catttgccatataacaaaatgagtttccttgaa 29597635  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 29647730 - 29647670
Alignment:
Q  61 aattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagttt 121  Q
    |||||| ||||||||| |  ||||||||| |||  |||||||||||||||||| |||||||    
T  29647730 aattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttt 29647670  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 50645491 - 50645560
Alignment:
Q  51 aattctaaataattgactccaagattctagaaatccaaactcttccatttgccatataacaaattgagtt 120  Q
    |||| ||||||||||| ||||||| ||| ||| |||||| || | ||||||||| |||||||| ||||||    
T  50645491 aattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagtt 50645560  T

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