View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7290_low_23 (Length: 209)
Name: NF7290_low_23
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7290_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41945935 - 41945733
Alignment:
| Q |
1 |
tcttaatgaagcttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaattt |
100 |
Q |
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| T |
41945935 |
tcttaatgaagcttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaattt |
41945836 |
T |
|
| Q |
101 |
aattttttgaaaatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattcagga-ttttttctatataatttcttcctcttcttcttc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
41945835 |
aattttttgaaaatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattcatgatttttttctatataatttcttcctcttcttcttc |
41945736 |
T |
|
| Q |
200 |
tca |
202 |
Q |
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||| |
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| T |
41945735 |
tca |
41945733 |
T |
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