View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7290_low_3 (Length: 590)
Name: NF7290_low_3
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7290_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 276 - 522
Target Start/End: Original strand, 38284715 - 38284961
Alignment:
| Q |
276 |
caaaattattataaactcacacataagtgaagttttcaaattcgaaccctaatcataatgctcagcttaataatttcgatatttttataccataaaaagt |
375 |
Q |
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| T |
38284715 |
caaaattattataaattcacacataagtgaagtttttaaattcgaaccctaatcataatgttccgcttaataatttcgatatttttataccataaaaagt |
38284814 |
T |
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| Q |
376 |
gtaagaaaatnnnnnnngttatctttttctcttctccctcatattttatttttaataataaaatttctggctcgaaagtccaaaacatcccagcgtcaga |
475 |
Q |
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| T |
38284815 |
gtaagaaaataaaaaaagttatctttttctcttctccctcatattttatttttaataataaaatttctggctcgaaagtccaaaacatcccagcgtcaga |
38284914 |
T |
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| Q |
476 |
tcagactcagacacaaaacttgataagaacgaacaacgataaccgtt |
522 |
Q |
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| T |
38284915 |
tcagactcagacacaaaacttgataagaacgaacaacgataaccgtt |
38284961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 38284104 - 38284351
Alignment:
| Q |
17 |
ttttatttacatacagcaaagtaaaatcatagtaagaaattaggttgtaaatacgatgatatgtgtaacttccgtgaaagaaaacagtgatt-gattctt |
115 |
Q |
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| T |
38284104 |
ttttatttacatacaacaaagtaaaatcatagtaagaaattaggttgtaaatacgatgatatgtgtaacttccgtgaaagaaaaccgtgatttgattctt |
38284203 |
T |
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| Q |
116 |
cnnnnnnnnnnnnnattacaagggagattatttaggctaaattacggacgaatacgtcgattaaaatagacattggctacatcctatcgtaaaaggttaa |
215 |
Q |
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| T |
38284204 |
cttcttgttttttaattacaagggaggttatt-aggctaaattacaaacgaatacgtcgattaaaatagacattggctatatcctgtcgtaaaaggttaa |
38284302 |
T |
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| Q |
216 |
gacaactcggcaatggaggtccaaatagtaagtacacgtaggtattaaa |
264 |
Q |
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| T |
38284303 |
gataactcggcaatggaggtccaaatagtaagtacacgtaggtattaaa |
38284351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 31546450 - 31546361
Alignment:
| Q |
173 |
cgattaaaatagacattggctacatcctatcgtaaaaggttaagacaactcggcaatgga-ggtccaaatagtaagtacacgtaggtatt |
261 |
Q |
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| T |
31546450 |
cgattaaaatagacattggctacattctaccataaaaggttaatacaacccggcggtggatgatcaaaatagtaagtacccataggtatt |
31546361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 2695754 - 2695822
Alignment:
| Q |
147 |
ttaggctaaattacggacgaatacgtcgattaaaatagacattggctacatcctatcgtaaaaggttaa |
215 |
Q |
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| T |
2695754 |
ttaggctaaactacagacgaacacgacgattgaaatagacatcgacaacatcctatcataaaaggttaa |
2695822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 39545149 - 39545225
Alignment:
| Q |
147 |
ttaggctaaattacggacgaatacgtcgattaaaatagacattggctacatcctatcgtaaaaggttaagacaactc |
223 |
Q |
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| T |
39545149 |
ttaggccaaactacagatgaacacgacgattaaaatagacattggttacattctgccataaaaggttaacacaactc |
39545225 |
T |
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