View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7290_low_4 (Length: 571)

Name: NF7290_low_4
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7290_low_4
NF7290_low_4
[»] chr3 (5 HSPs)
chr3 (177-555)||(54137456-54137834)
chr3 (8-125)||(54137880-54137997)
chr3 (327-375)||(13371129-13371177)
chr3 (327-369)||(14548737-14548779)
chr3 (335-375)||(5292530-5292570)
[»] chr5 (8 HSPs)
chr5 (327-376)||(37588369-37588418)
chr5 (327-375)||(8651363-8651410)
chr5 (327-364)||(35553209-35553246)
chr5 (327-376)||(37526208-37526257)
chr5 (347-375)||(10280608-10280636)
chr5 (327-363)||(18902807-18902843)
chr5 (327-375)||(20028500-20028548)
chr5 (327-375)||(38104867-38104915)
[»] chr4 (8 HSPs)
chr4 (329-374)||(2592320-2592365)
chr4 (331-375)||(5131260-5131304)
chr4 (329-375)||(19429723-19429769)
chr4 (329-375)||(25487575-25487621)
chr4 (327-375)||(7694020-7694068)
chr4 (330-374)||(27123363-27123407)
chr4 (327-375)||(29263382-29263430)
chr4 (327-375)||(53673668-53673716)
[»] chr1 (9 HSPs)
chr1 (330-379)||(6981507-6981556)
chr1 (327-379)||(12564505-12564557)
chr1 (329-375)||(26916215-26916261)
chr1 (327-372)||(35590905-35590950)
chr1 (327-375)||(6279411-6279459)
chr1 (327-375)||(10199418-10199466)
chr1 (327-375)||(11893603-11893651)
chr1 (327-375)||(28077079-28077127)
chr1 (327-375)||(47598431-47598479)
[»] scaffold0089 (1 HSPs)
scaffold0089 (327-375)||(33637-33685)
[»] chr8 (5 HSPs)
chr8 (327-375)||(28769349-28769397)
chr8 (327-369)||(11795104-11795146)
chr8 (327-375)||(26479797-26479845)
chr8 (327-375)||(30277255-30277303)
chr8 (327-375)||(42215092-42215140)
[»] chr7 (5 HSPs)
chr7 (327-375)||(24363611-24363659)
chr7 (327-379)||(44821971-44822023)
chr7 (333-375)||(46082054-46082096)
chr7 (327-364)||(39505968-39506005)
chr7 (327-375)||(7244692-7244740)
[»] chr6 (6 HSPs)
chr6 (327-375)||(20512654-20512702)
chr6 (333-375)||(7785754-7785796)
chr6 (329-375)||(27909648-27909694)
chr6 (327-375)||(281858-281906)
chr6 (330-374)||(2460162-2460206)
chr6 (327-375)||(34939756-34939804)
[»] chr2 (5 HSPs)
chr2 (327-375)||(1939342-1939390)
chr2 (327-375)||(6227763-6227811)
chr2 (327-375)||(11488289-11488337)
chr2 (327-375)||(35379026-35379074)
chr2 (327-375)||(41817180-41817228)


Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 177 - 555
Target Start/End: Complemental strand, 54137834 - 54137456
Alignment:
Q  177 ttgttattaaagatgaagacaaagtcgctttgcaatttatggattcacttcataactatctatccctttccgattctctctcctccacacttcgacaggt 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54137834 ttgttattaaagatgaagacaaagtcgctttgcaatttatggattcacttcataactatctatccctttccgattctctctcgtccacacttcgacaggt 54137735  T
Q  277 acatacataacctaatcaaattcaatttaattaccactgattaatatgaatcataagctattctggtgagcttatggaaataagctgataacaacttatt 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137734 acatacataacctaatcaaattcaatttaattaccactgattaatatgaatcataagctattctggtgagcttatggaaataagctgataacaacttatt 54137635  T
Q  377 gacgaggcatatgctatttctacttattgaagctttctcaaacaatttcataatttcagtttataagttcagatatgatgcaatgctcctgatattcaca 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137634 gacgaggcatatgctatttctacttattgaagctttctcaaacaatttaataatttcagtttataagttcagatatgatgcaatgctcctgatattcaca 54137535  T
Q  477 ggggtggctggagttagcaagtgctagatattctatgggtacttcgcgcgttaatagttctttattggacctcaaattc 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137534 ggggtggctggagttagcaagtgctagatattctatgggtacttcgcgcgttaatagttctttattggacctcaaattc 54137456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 54137997 - 54137880
Alignment:
Q  8 aaataatactatgaccaagtaaaactatgtacgagtacgacaaaacatcataacagtgtaaagtgtggaaatctagcggaaagaaaaaattcgtgatccc 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137997 aaatattactatgaccaagtaaaactatgtacgagtacgacaaaacattataacagtgtaaagtgtggaaatctagcggaaagaaaaaattcgtgatccc 54137898  T
Q  108 aaaaatcttagtgaatgg 125  Q
    ||||||||||| ||||||    
T  54137897 aaaaatcttagcgaatgg 54137880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 13371129 - 13371177
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  13371129 tcataagctattatgaagagcttatggaaataagctgaaaacaacttat 13371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 14548779 - 14548737
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataaca 369  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||    
T  14548779 tcataagttattctggagagcttatggaaataagctgaaaaca 14548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 5292570 - 5292530
Alignment:
Q  335 tattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||| ||| ||||||||||||||||||||| ||||||||||    
T  5292570 tattatggagagcttatggaaataagctgaaaacaacttat 5292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 37588418 - 37588369
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttatt 376  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||||    
T  37588418 tcataagttattctggagagcttatggaaataagctgaaaacagcttatt 37588369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 8651410 - 8651363
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  8651410 tcataagctattctgg-gagcttatggaaatatgctgaaaacaacttat 8651363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 35553246 - 35553209
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctga 364  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  35553246 tcatacgctattctggagagcttatggaaataagctga 35553209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 37526257 - 37526208
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttatt 376  Q
    ||||||| | |||||| ||||||||||||||||||||| |||| ||||||    
T  37526257 tcataagttgttctggagagcttatggaaataagctgaaaacagcttatt 37526208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 10280636 - 10280608
Alignment:
Q  347 cttatggaaataagctgataacaacttat 375  Q
    |||||||||||||||||||||||||||||    
T  10280636 cttatggaaataagctgataacaacttat 10280608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 18902807 - 18902843
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctg 363  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  18902807 tcataagctattttggggagcttatggaaataagctg 18902843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 20028548 - 20028500
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| ||  |||||||| |||||||||||| ||||||||||    
T  20028548 tcataagctattatgaagagcttatagaaataagctgaaaacaacttat 20028500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 38104915 - 38104867
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||  | | ||||||||||||||||||||| ||||||||||    
T  38104915 tcataagctatcttagagagcttatggaaataagctgaaaacaacttat 38104867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 2592365 - 2592320
Alignment:
Q  329 ataagctattctggtgagcttatggaaataagctgataacaactta 374  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||    
T  2592365 ataagctattttggagagcttatggaaataagctgaaaacaactta 2592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 5131304 - 5131260
Alignment:
Q  331 aagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||||    
T  5131304 aagctatcctggagagcttatggaaataagctgaaaacaacttat 5131260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 19429723 - 19429769
Alignment:
Q  329 ataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||||    
T  19429723 ataagctatcctggagagcttatggaaataagctgaaaacagcttat 19429769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 25487621 - 25487575
Alignment:
Q  329 ataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||||| || |||||||||||||| |||||||| |||||    
T  25487621 ataagctattctggggaacttatggaaataagttgataacagcttat 25487575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 7694068 - 7694020
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||| ||| |||| ||| ||||||||||||||||| ||||||||||    
T  7694068 tcataagttatcctggagagtttatggaaataagctgaaaacaacttat 7694020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 27123407 - 27123363
Alignment:
Q  330 taagctattctggtgagcttatggaaataagctgataacaactta 374  Q
    ||||||||| ||| ||||||||||||||||| ||| |||||||||    
T  27123407 taagctattatggagagcttatggaaataagttgaaaacaactta 27123363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 29263382 - 29263430
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| |||  |||||| |||||||||||||| ||||||||||    
T  29263382 tcataagctatcctgcagagcttgtggaaataagctgaaaacaacttat 29263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 53673716 - 53673668
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  53673716 tcataagctatcttggagagcttatgtaaataagctgaaaacaacttat 53673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 6981507 - 6981556
Alignment:
Q  330 taagctattctggtgagcttatggaaataagctgataacaacttattgac 379  Q
    ||||||||||||| ||| ||||||||||| ||||| ||||||||||||||    
T  6981507 taagctattctggagagtttatggaaatatgctgaaaacaacttattgac 6981556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 12564557 - 12564505
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttattgac 379  Q
    |||||||||||  ||| || |||||||||||||||||| ||||||||||||||    
T  12564557 tcataagctatcttggagaacttatggaaataagctgaaaacaacttattgac 12564505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 26916215 - 26916261
Alignment:
Q  329 ataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||| |||||||| ||||||||||||||||||||  ||||||||||    
T  26916215 ataagttattctggagagcttatggaaataagctggaaacaacttat 26916261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 35590950 - 35590905
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaact 372  Q
    |||||||||||  ||| ||||||||||||||||||||| |||||||    
T  35590950 tcataagctatcatggagagcttatggaaataagctgaaaacaact 35590905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 6279411 - 6279459
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| || | ||||||||||||||| ||||| ||||||||||    
T  6279411 tcataagctatcctagagagcttatggaaatacgctgaaaacaacttat 6279459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 10199466 - 10199418
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| | | ||||||||| ||||||||||| ||||||||||    
T  10199466 tcataagctattttagagagcttatgaaaataagctgaaaacaacttat 10199418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 11893651 - 11893603
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| ||  ||| ||||||||||||||||| ||||||||||    
T  11893651 tcataagctattttgaagagtttatggaaataagctgaaaacaacttat 11893603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 28077127 - 28077079
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| | | |||||||| |||||||||||| ||||||||||    
T  28077127 tcataagctattttagagagcttattgaaataagctgaaaacaacttat 28077079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 47598479 - 47598431
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| |||| |||||||||| || ||||||| ||||||||||    
T  47598479 tcataagctatcctggagagcttatggcaacaagctgaaaacaacttat 47598431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 33685 - 33637
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  33685 tcataagctattatgaagagcttatggaaataagctgaaaacaacttat 33637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 28769397 - 28769349
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| ||| ||| ||||||||||||||||| ||||||||||    
T  28769397 tcataagctattttggagagtttatggaaataagctgaaaacaacttat 28769349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 11795104 - 11795146
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataaca 369  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||    
T  11795104 tcataagctattatggagagcttatggaaataagctgaaaaca 11795146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 26479797 - 26479845
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||| ||||||||| ||||||||||||||| ||||| || |||||||    
T  26479797 tcataacctattctggagagcttatggaaatacgctgaaaaaaacttat 26479845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 30277303 - 30277255
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| || | ||| ||||||||||||||||| ||||||||||    
T  30277303 tcataagctatcctagagagtttatggaaataagctgaaaacaacttat 30277255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 42215140 - 42215092
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  42215140 tcataagctatcttggagagcttatgtaaataagctgaaaacaacttat 42215092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 24363659 - 24363611
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  24363659 tcataagctatcctggagaggttatggaaataagctgaaaacaacttat 24363611  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 44821971 - 44822023
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttattgac 379  Q
    |||||||||||||||| || |||||| ||||||| ||| ||||||||||||||    
T  44821971 tcataagctattctggagaacttatgaaaataagttgaaaacaacttattgac 44822023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 46082054 - 46082096
Alignment:
Q  333 gctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||    
T  46082054 gctattctggagagcttatgaaaataagctgaaaacaacttat 46082096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 39505968 - 39506005
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctga 364  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  39505968 tcataagctattctggagagtttatggaaataagctga 39506005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 7244692 - 7244740
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  7244692 tcataagctatattggagagcttatgaaaataagctgaaaacaacttat 7244740  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 20512702 - 20512654
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  20512702 tcataagctattatgaagagcttatggaaataagctgaaaacaacttat 20512654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 7785796 - 7785754
Alignment:
Q  333 gctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||    
T  7785796 gctattttggagagcttatggaaataagctgaaaacaacttat 7785754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 27909694 - 27909648
Alignment:
Q  329 ataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||| | |||| ||||||||||||||||||||| ||||||||||    
T  27909694 ataagctttactggagagcttatggaaataagctgaaaacaacttat 27909648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 281906 - 281858
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| || | ||||| ||||||||||||||| ||||||||||    
T  281906 tcataagctatcctagagagctcatggaaataagctgaaaacaacttat 281858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 2460206 - 2460162
Alignment:
Q  330 taagctattctggtgagcttatggaaataagctgataacaactta 374  Q
    ||||||||| ||| ||||||||||||||||| ||| |||||||||    
T  2460206 taagctattatggagagcttatggaaataagttgaaaacaactta 2460162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 34939756 - 34939804
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||| ||||    
T  34939756 tcataagctatcctggagagtttatggaaataagctgaaaacaatttat 34939804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 1939390 - 1939342
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| |||| ||||||||||||||||| ||| |||| |||||    
T  1939390 tcataagctatactggagagcttatggaaataagttgaaaacagcttat 1939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 6227763 - 6227811
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||| ||| |||||||||| || ||||||| ||||||||||    
T  6227763 tcataagctattttggagagcttatggtaacaagctgaaaacaacttat 6227811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 11488289 - 11488337
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    ||||||||||| |||| ||| ||||| ||||||||||| ||||||||||    
T  11488289 tcataagctatcctggagagattatgcaaataagctgaaaacaacttat 11488337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 35379074 - 35379026
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  35379074 tcataagctatcttggagagcttatgaaaataagctgaaaacaacttat 35379026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 41817180 - 41817228
Alignment:
Q  327 tcataagctattctggtgagcttatggaaataagctgataacaacttat 375  Q
    |||||| |||| |||| ||||||||||||||||||||| ||||| ||||    
T  41817180 tcataaactatcctggagagcttatggaaataagctgaaaacaaattat 41817228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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