View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7290_low_6 (Length: 454)
Name: NF7290_low_6
Description: NF7290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7290_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 49865201 - 49864771
Alignment:
| Q |
16 |
ataataattttggaagtagagttttttcatttacattttctaactgtatcatgaaacaataccctgcagatgattacttcctatcacgtttgccaatagt |
115 |
Q |
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| T |
49865201 |
ataataattttggaagtagagttttttcatttacattttctaactgtatcatgaaacaataccctgcagatgattacttcctatcacgtttgccaatagt |
49865102 |
T |
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| Q |
116 |
cagtttgcgattagctgaaggaggagttcgattggcagcaaccctcaatcgtatttttcagtgatgcaacatgttctgatggaatttgttgaattattat |
215 |
Q |
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| T |
49865101 |
cagtttgcgattagctgaaggaggagttcgattggcagcaaccctcaatcgtatttttcagtgatgcaacatgttctgatgtaatttgttgaattattat |
49865002 |
T |
|
| Q |
216 |
aaataacatgtgattggtttgaattatgataactgaaacagaataaagtttctgactttctgtagtaccctgtggaggttatctatcttgtagtttacca |
315 |
Q |
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| T |
49865001 |
aaataacatgtgattggtttgaattatgataactgaaacagaataaagtttctgactttctgtagtaccctgtggaggttatctatcttgtagtttacca |
49864902 |
T |
|
| Q |
316 |
aattattgtcattaagagcgtaatttgattcaacacacgatgcttaactcaccccagttgttttatttgaacatacgcgtaacactgtcttcttgtatgt |
415 |
Q |
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| T |
49864901 |
aattattgtcattaagagcgttatttgattcaacacacgatgcttaactcactccagttgttttatttgaacatacacgtaacactgtcttcttgtatgt |
49864802 |
T |
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| Q |
416 |
ttatcttctatcacttttcatgatgtccatc |
446 |
Q |
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| T |
49864801 |
ttatcttctatcacttttcatcatgtacatc |
49864771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 23143197 - 23143104
Alignment:
| Q |
80 |
tgcagatgattacttcctatcacgtttgccaatagtcagtttgcgattagctgaaggaggagttcgattggcagcaaccctcaatcgtattttt |
173 |
Q |
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| T |
23143197 |
tgcagatgattacttcctgtcacgttttcctatcgtcaatttgcgattagctcaaggaggagttcgattggctgcaactctaaatcgtattttt |
23143104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 23134252 - 23134159
Alignment:
| Q |
80 |
tgcagatgattacttcctatcacgtttgccaatagtcagtttgcgattagctgaaggaggagttcgattggcagcaaccctcaatcgtattttt |
173 |
Q |
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| T |
23134252 |
tgcagatgattacttcctgtcacgttatcctatcgtcaatttgcgattagctcaagggggagttcgattggctgcaactctaaatcgtattttt |
23134159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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