View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7291_high_5 (Length: 549)
Name: NF7291_high_5
Description: NF7291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7291_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Complemental strand, 4224173 - 4223649
Alignment:
| Q |
16 |
caatcttaaacctcttgttccaatccaaaagtgaagaagaaccaccatcttgattctcatgcaagtaaaattccaaattcaccattcgaacaaactccat |
115 |
Q |
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| T |
4224173 |
caatcttaaacctcttgttccaatccaaaagtgaagaagaaccaccatcttgattctcatgcaagtaaaattccaaattcgccattcgaacaaactccat |
4224074 |
T |
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| Q |
116 |
caatataactctttcacctgataatgagagaatatgaattacatcaagggatacataagacttatatagtcgacgagaaccgagaagaacaactaactag |
215 |
Q |
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| T |
4224073 |
caatataactctttcacctgataatgagagaatatgaattacatcaagagatacataagacttatatagtcgacgagaaccgagaagaacaactaactag |
4223974 |
T |
|
| Q |
216 |
tataactaacgtttatatggaatacctggtgcttctgagaatcctattataggaacaacgttagggtgttgagctaaagagagccatttcatgacagatg |
315 |
Q |
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| T |
4223973 |
tataactaacgtttatatggaatacctggtgcttctgagaatcctattataggaacaacgttagggtgttgagataaagagagccatttcatcacagatg |
4223874 |
T |
|
| Q |
316 |
aaaaaccaaatcctgcgttgcttaacacaagaacagaatgaatgcgtttcacagctacaagctcttcattttcgagtttaccagcataaactgttcctaa |
415 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4223873 |
aaaaaccaaaacctgcgttgcttaacacaagaacagaatgaatgcgtttcacagctacaagctcttcattttcgagtttaccagcataaactgttcctaa |
4223774 |
T |
|
| Q |
416 |
acgaccttttccaatgatactcctatggttgaagccatttgtagcaatatcaataactgttaaagggtatacaagagcactttgtttcactggaagtgtt |
515 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
4223773 |
acgaccttttccaatgattctcctatggttgaagccatttgtagcaatatcaataactgttaaagggtataaaagagcaatttgtttcactggaagtgtt |
4223674 |
T |
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| Q |
516 |
tcttctgattcaactggtttcttct |
540 |
Q |
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| T |
4223673 |
tcttctgattcaactggtttcttct |
4223649 |
T |
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