View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7291_high_9 (Length: 356)
Name: NF7291_high_9
Description: NF7291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7291_high_9 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 15884877 - 15884588
Alignment:
| Q |
1 |
ggtgcaaaaccaatatttgtgaatccatatgctagtatttccatggccaaaattttaggcctagaagcaaatattacatcatgggttttaagtacttcct |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
15884877 |
ggtgaaaaaccaatatttgtgaatccatatgatagtatttcaatggccaaaattttaggcctagatgcaaatattacatcatgggttttaagtacctcct |
15884778 |
T |
|
| Q |
101 |
tagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
15884777 |
tagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcattaagggtccatgtattttggccaagtctcttaatttttgatg |
15884678 |
T |
|
| Q |
201 |
tggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggtaggtttggagctgagccttttttctt |
290 |
Q |
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||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
15884677 |
tggtgtagaggtaactagatgatgtatgtgtcctataataggtagcttccatggtcctgggggtaggtttggagatgagccttttttctt |
15884588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 12638181 - 12638460
Alignment:
| Q |
11 |
caatatttgtgaatccatatgctagtatttccatggccaaaattttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtc |
110 |
Q |
| |
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|||||| |||| |||||||| |||||| || || || | |||||||||| |||| |||||||| | |||||| ||||| | ||| ||| ||||||| || |
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| T |
12638181 |
caatatctgtggatccatataatagtatgtctattgcaacaattttaggcttagatgcaaatatgatatcatgagttttcattacctccctagcatactc |
12638280 |
T |
|
| Q |
111 |
tggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagag |
210 |
Q |
| |
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|||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||| | ||||||||| |||||||||||| |||||||||||||| |
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| T |
12638281 |
tggtgaggaaacaacaattgcagagatctctccaagttgtaagtgcatcaagggtccatacactttggccaaatctcttaatttttgatgtggtgtagag |
12638380 |
T |
|
| Q |
211 |
gaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggtaggtttggagctgagccttttttctt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| | ||||||||| |
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| T |
12638381 |
gaaacaagatggtgtatgtgtcctataataggcagcttccatggtcctgggggtagatttggagctgaactttttttctt |
12638460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 54 - 288
Target Start/End: Original strand, 12611224 - 12611457
Alignment:
| Q |
54 |
tttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagt |
153 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||| || ||||||||||| ||| |||||||||| |||||||| |
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|
| T |
12611224 |
tttaggcctagatgcaaatattacatcatgggttttaagtacctccctagcatactctggcgatgaaacaacaattgcagagatctctccaagttgtagg |
12611323 |
T |
|
| Q |
154 |
tgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatg |
253 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | ||| | ||| |||||| |||||||||||||| | |||||| |
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| T |
12611324 |
tgcatcaagggtccataaattttcgccaagtctcttaattttcgatgtggtgtagaagtaactaaatgatgtatgcttcctataataggtaacttccatg |
12611423 |
T |
|
| Q |
254 |
gtcctggaggtaggtttggagctgagccttttttc |
288 |
Q |
| |
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||||||| ||||| ||||||||||| ||||||||| |
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| T |
12611424 |
gtcctggtggtagctttggagctga-ccttttttc |
12611457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 63304 - 63580
Alignment:
| Q |
1 |
ggtgcaaaaccaatatttgtgaatccatatgctagtatttccatggccaaaattttaggcctagaagcaaatattacatcatgggttttaagtacttcct |
100 |
Q |
| |
|
|||| ||| ||||||| | |||||||||||| ||| ||||| | || | ||| ||||||||||| |||||| | |||||||||||||||| || ||| |
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| T |
63304 |
ggtgaaaagccaatatctttgaatccatatgttagcatttctagagctacaatgttaggcctagatgcaaatttgacatcatgggttttaaatatctccc |
63403 |
T |
|
| Q |
101 |
tagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatg |
200 |
Q |
| |
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||||||| |||||||||||||||||||| ||| |||||||||| |||||||| |||||||||| ||||||| ||||||||||||| || ||||||||||| |
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| T |
63404 |
tagcatactctggtgaggaaacaacaattgcagagatctctccaagttgtagctgcatcaaggatccatgtgttttggccaagtcactcaattttcgatg |
63503 |
T |
|
| Q |
201 |
tggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggtaggtttggagctg |
277 |
Q |
| |
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||| ||||| | || ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
63504 |
tggggtagatgtaagtagatgatgtatgtgtccaataataggtagcttccatggtcctggaggtaggtttggagctg |
63580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 22947673 - 22947869
Alignment:
| Q |
69 |
aaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtcca |
168 |
Q |
| |
|
||||||||||||||| ||||| | || |||| ||||||| |||| ||||||||||| |||| ||||| || || ||||| || ||||| || || ||| |
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| T |
22947673 |
aaatattacatcatgagttttcattatttccatagcatattctgctgaggaaacaataatgaaaaagacttcaccaagttgaagatgcattaaagggcca |
22947772 |
T |
|
| Q |
169 |
tgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggta |
265 |
Q |
| |
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| | | || | ||| ||||||||||||| |||||||| |||| || ||||| ||||||| |||||| || |||||| ||||||| ||||| |||| |
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|
| T |
22947773 |
tatttatttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcctatgattggtagcttccatggccctggtggta |
22947869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 22987445 - 22987532
Alignment:
| Q |
109 |
tctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttc |
196 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || |||||||| |||||||||||||||| | |||| || || ||||||||||||| |
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|
| T |
22987445 |
tctggtgaggaaacaacaatgaaaaatatctcaccaagttgtagatgcatcaagggtccatatttttttgctaaatctcttaattttc |
22987532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 23018544 - 23018651
Alignment:
| Q |
139 |
tctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataa |
238 |
Q |
| |
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||||| ||||| || |||||||||||||||| | ||||||||||||| |||||||||| ||| ||| |||| | ||||| |||||| | |||||||| |
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| T |
23018544 |
tctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataa |
23018643 |
T |
|
| Q |
239 |
taggtagc |
246 |
Q |
| |
|
|||||||| |
|
|
| T |
23018644 |
taggtagc |
23018651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 23040334 - 23040440
Alignment:
| Q |
138 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctata |
237 |
Q |
| |
|
|||||| ||||| || ||||||| |||||||| | |||||||||||||||||| ||||||||| ||| ||||| | |||| |||||| | ||||||| |
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| T |
23040334 |
ctctccaagttgaagatgcatcaggggtccatattttttggccaagtctcttagttttcgatggggttgagaggttaacagattgtgtatatttcctata |
23040433 |
T |
|
| Q |
238 |
ataggta |
244 |
Q |
| |
|
||||||| |
|
|
| T |
23040434 |
ataggta |
23040440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 22997676 - 22997732
Alignment:
| Q |
68 |
caaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaa |
124 |
Q |
| |
|
||||||| |||||||| ||||| | || |||||||||||| |||| ||||||||||| |
|
|
| T |
22997676 |
caaatataacatcatgagttttcattatttccttagcatattctgctgaggaaacaa |
22997732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 23025558 - 23025626
Alignment:
| Q |
136 |
atctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggt |
204 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| | | | |||||||||| || ||||||||||||| |
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|
| T |
23025558 |
atctctccaagttggagatgcatcaagggtccatattctcttgccaagtctcgtagttttcgatgtggt |
23025626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 23037457 - 23037513
Alignment:
| Q |
138 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattt |
194 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
23037457 |
ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaattt |
23037513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 265
Target Start/End: Original strand, 23611510 - 23611666
Alignment:
| Q |
109 |
tctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtag |
208 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| || ||||| || |||||||||||||||| | ||||||| || ||||||||| ||| | ||||| | | |
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|
| T |
23611510 |
tctggtgaagaaataacaatgaaaaagatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaatcttctaggtggttttg |
23611609 |
T |
|
| Q |
209 |
aggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggta |
265 |
Q |
| |
|
| |||||||||| | || | ||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
23611610 |
ttgcaacaagatggagaatatttcctaaaatgggtagtttccatggccctggaggta |
23611666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 14307626 - 14307706
Alignment:
| Q |
112 |
ggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaat |
192 |
Q |
| |
|
||||| |||| ||||||| ||||||||| || ||||| || |||||||||||||||| | ||||||| || ||||||||| |
|
|
| T |
14307626 |
ggtgaagaaataacaatgaaaaagatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaat |
14307706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 21781224 - 21781285
Alignment:
| Q |
138 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgat |
199 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
21781224 |
ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaatcttcgat |
21781285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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