View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7291_low_1 (Length: 669)

Name: NF7291_low_1
Description: NF7291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7291_low_1
NF7291_low_1
[»] chr8 (12 HSPs)
chr8 (249-509)||(4698933-4699194)
chr8 (39-237)||(4698488-4698689)
chr8 (568-653)||(4699253-4699338)
chr8 (18-58)||(4698431-4698471)
chr8 (380-448)||(4678865-4678933)
chr8 (316-388)||(4713225-4713297)
chr8 (256-294)||(4713155-4713193)
chr8 (257-294)||(4713193-4713230)
chr8 (256-291)||(4724813-4724848)
chr8 (256-294)||(4744421-4744459)
chr8 (376-429)||(4687620-4687673)
chr8 (384-420)||(4894839-4894875)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 249 - 509
Target Start/End: Original strand, 4698933 - 4699194
Alignment:
Q  249 tacaaatattgaattagtaaattattcatgaattaaggtatgacttgtttttaataagggtatggtgtgacttacttgaaaactgcatcattgaattagt 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4698933 tacaaatattgaattagtaaattattcatgaattaaggtatgacttgttttttttaagggtatggtgtgacttacttgaaaactgcatcattgaattagt 4699032  T
Q  349 aaaatatgcacgaattgtttggttatgatatattagtgtgaaagtcactcgatagttgctgattacattaataatccaataactggttatttaagaattt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4699033 aaaatatgcacgaattgtttggttatgatatattagtgtgaaagtcactcgatagttgctgattacattaataatccaataactggttatttaagaattt 4699132  T
Q  449 atcattaaactacg-aaaaaatgtcattaaaataaggccttctttcctacaagttggtccta 509  Q
     ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||    
T  4699133 gtcattaaactacgaaaaaaatgtcattaaaataaggccttcttttctacaagtcggtccta 4699194  T

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Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 4698488 - 4698689
Alignment:
Q  39 gatatggacataattcgtttaggtatacttattattatcatcatcattgattatctacgtgtgaggctgtaacagttgagtactttaatttattggtaca 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4698488 gatatggacataattcgtttaggtatacttattattatcatcatcattgattatctacgtgtgaggctgtaacagttgagtactttaattttttggtaca 4698587  T
Q  139 agagtactttaa---taagcacgtcttttatataataaccgttacatttgaagtcagctatagaatataaatatgtagaaattaagccattgaattagta 235  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  4698588 agagtactttaatattaagcacgtcttttatataataaccgttacatttgacatcagctatagaatataaatatgtagaaattaagccattgaattagta 4698687  T
Q  236 tt 237  Q
    ||    
T  4698688 tt 4698689  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 568 - 653
Target Start/End: Original strand, 4699253 - 4699338
Alignment:
Q  568 acatagatcaagtgttttgtttggtgattttattgtctcagtgcagtgttgctttgttcgtcacactggtgcggcattggttgatg 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4699253 acatagatcaagtgttttgtttggtgattttattgtctcagtgcagtgttgctttgttcgtcacactggtgcagcattggttgatg 4699338  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4698431 - 4698471
Alignment:
Q  18 catcgtacgtatgagatcattgatatggacataattcgttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4698431 catcgtacgtatgagatcattgatatggacataattcgttt 4698471  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 448
Target Start/End: Original strand, 4678865 - 4678933
Alignment:
Q  380 attagtgtgaaagtcactcgatagttgctgattacattaataatccaataactggttatttaagaattt 448  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||||||   | ||| |||||||||||    
T  4678865 attattgtgaaagtcactcgatagttgctgattatattaatcatccaatggtttgttgtttaagaattt 4678933  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 4713225 - 4713297
Alignment:
Q  316 tgacttacttgaaaactgcatcattgaattagtaaaatatgcacgaattgtttggttatgatatattagtgtg 388  Q
    ||||||||||| ||| | |||||||||||| ||||||||||   ||||||||| |||||||||||||| ||||    
T  4713225 tgacttacttgcaaattacatcattgaatttgtaaaatatggttgaattgtttagttatgatatattattgtg 4713297  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 4713155 - 4713193
Alignment:
Q  256 attgaattagtaaattattcatgaattaaggtatgactt 294  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  4713155 attgaattagtaaattattcatgaattaagatatgactt 4713193  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 4713193 - 4713230
Alignment:
Q  257 ttgaattagtaaattattcatgaattaaggtatgactt 294  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  4713193 ttgaattagtaaattattcatgaattaagatatgactt 4713230  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 4724813 - 4724848
Alignment:
Q  256 attgaattagtaaattattcatgaattaaggtatga 291  Q
    |||||||||||||| |||||||||||||||||||||    
T  4724813 attgaattagtaaactattcatgaattaaggtatga 4724848  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 4744421 - 4744459
Alignment:
Q  256 attgaattagtaaattattcatgaattaaggtatgactt 294  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  4744421 attgaattagtaaactatttatgaattaaggtatgactt 4744459  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 4687620 - 4687673
Alignment:
Q  376 atatattagtgtgaaagtcactcgatagttgctgattacattaataatccaata 429  Q
    |||||||| |||||||||||| | |||||||| ||||| |||||| ||||||||    
T  4687620 atatattattgtgaaagtcacactatagttgcagattatattaatcatccaata 4687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 4894875 - 4894839
Alignment:
Q  384 gtgtgaaagtcactcgatagttgctgattacattaat 420  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  4894875 gtgtgaaaatcactcgatagttgctgattatattaat 4894839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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