View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7291_low_2 (Length: 630)
Name: NF7291_low_2
Description: NF7291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7291_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 49208962 - 49209332
Alignment:
| Q |
1 |
tttggttactactaatatattctttgatttcacttagttgagtgatgaagaggtaaaatggtttataagagttgtttgtgtgtgtaaaaactaaagaaaa |
100 |
Q |
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| T |
49208962 |
tttggttactactaatatatcctttgatttcacttagttgagtgatgaagaggtaaaatggtttataagagttgtttgtgtgtgtaaaaactaaagaaaa |
49209061 |
T |
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| Q |
101 |
aggtttagagtgagttagttaatgcaacaatatatatagtatagtacagggatgaatgaaataacacataaaacagttatgaccgttgatttgagagaga |
200 |
Q |
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| T |
49209062 |
aggtttagagtgagttagttaatgcaacaatatatatagtatagtatagggatgaatgaaataacacataaaacagttatgaccgttgatttgagagaga |
49209161 |
T |
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| Q |
201 |
gtgatgaagattgaattcaagtgtgatcgatgtgatatgatgaaatgaatgagttggaatgctttttggcatgcctttgtctttgttgtgtactatgagg |
300 |
Q |
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| T |
49209162 |
gtgatgaagattgaattcaagtgtgatcgatgtgatatgatgaaatgaatgagttggaatgctttttggcatgcctttgtctttgttgtgtactatgagg |
49209261 |
T |
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| Q |
301 |
gtggaacactcatcattctgtcattttcaaatcttccacccacgcatcttcactttttctatataattata |
371 |
Q |
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| T |
49209262 |
gtggaacactcatcattctgtcattttcaaatcttccacccacgcatcttcactttttctatataattata |
49209332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 440 - 624
Target Start/End: Original strand, 49209401 - 49209585
Alignment:
| Q |
440 |
aagtgtttttgtacacaaaaccaatttaaataaacttgattttgtaaaaagagtatagtatgaaaatgagtttataagtgacatgcattcctaatcttac |
539 |
Q |
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| T |
49209401 |
aagtgtttttgtacacaaaaccaatttaaataaacttgattttgtaaaaagagtatagtatgaaaatgagtttataagtgacatgcattcctaatcttac |
49209500 |
T |
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| Q |
540 |
agtatattgatttctcttgagatattttttactaaataaaaggcttatagtgatgcaacttattatctgtttgtcttcttctcac |
624 |
Q |
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| T |
49209501 |
agtatactgatttctcttgagatattttttactaaataaaagacttatagtgatgcaacttattatctgtttgtcttcttctcac |
49209585 |
T |
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