View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7291_low_5 (Length: 579)
Name: NF7291_low_5
Description: NF7291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7291_low_5 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 43697540 - 43698070
Alignment:
| Q |
19 |
ttatcaccatgccttttatcattggtatcttatctatgacttgcatggatttgtactttgaatgatcttgaattttgatgtatatataatatggttttgt |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43697540 |
ttatcaccatgccttttataattggtatcttatctatgacttgcatgcatttttactttgaatgagcttgaattttgatgtatatataatatggttttgt |
43697639 |
T |
|
| Q |
119 |
tgtgattattttgattgaagggaatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacagactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43697640 |
tgtgattattttgattgaagggaatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacagactt |
43697739 |
T |
|
| Q |
219 |
caccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43697740 |
caccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgat |
43697839 |
T |
|
| Q |
319 |
tcctaggtgttggaataggttcttctatcagtttcctggtatgatttactcnnnnnnngacttgaatatgcctattattaagtttaattttgggatgaat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43697840 |
tcctaggtgttggaataggttcttctatcagtttcctggtatgatttactctttttttgacttgaatatgcctattattaagtttaattttgggatgaat |
43697939 |
T |
|
| Q |
419 |
tgtatagatttgaatgatcacatacatatatacttcctccaattttgaacgtaagaaacaaaagnnnnnnncacatttattaagaaagtaaaataattgc |
518 |
Q |
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| T |
43697940 |
tgtatagatttgaatg----------------------ccgattttgaacgtaagaaacaaaagaaaaaaacacatttattaagaaagtaaaataattgc |
43698017 |
T |
|
| Q |
519 |
gtttaagtcattatatacatttaccgacgtccagaaccattcattttcatctc |
571 |
Q |
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| T |
43698018 |
gtttaagtcattatatacatttaccgacgtccagaaccattcatttccatctc |
43698070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 116 - 368
Target Start/End: Original strand, 43712560 - 43712812
Alignment:
| Q |
116 |
tgttgtgattattttgattgaagggaatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacaga |
215 |
Q |
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|||||||||| |||| ||| ||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43712560 |
tgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggactattacccaacatgatattgtatttgatgggatcatacaga |
43712659 |
T |
|
| Q |
216 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
43712660 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttatcttggtc |
43712759 |
T |
|
| Q |
316 |
gattcctaggtgttggaataggttcttctatcagtttcctggtatgatttact |
368 |
Q |
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| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43712760 |
gcttcttaggtgtcggaataggttcttctatcagtttcctggtatgatttact |
43712812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 141 - 361
Target Start/End: Original strand, 43726181 - 43726401
Alignment:
| Q |
141 |
aatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacagacttcaccttggcatatctactcaga |
240 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || || |||||||||||||| |||||| ||||| ||||| |||| || | ||||||||| |
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| T |
43726181 |
aatgaggcacttgcaaggatggcaagtttgggactattgcccaatatgatattgtatttcatgggaagttacaggcttcatcttgccaaagctactcaga |
43726280 |
T |
|
| Q |
241 |
tacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttc |
340 |
Q |
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| T |
43726281 |
ttcttctcttatcctctgcagctagcaatttcacacctgtggttggtgcttttattgcagattcttatctcggtcggttcctcggtgttggattaggttc |
43726380 |
T |
|
| Q |
341 |
ttctatcagtttcctggtatg |
361 |
Q |
| |
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| | |||| ||||||||||| |
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| T |
43726381 |
atttgtcagcttcctggtatg |
43726401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 141 - 359
Target Start/End: Original strand, 43685111 - 43685329
Alignment:
| Q |
141 |
aatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacagacttcaccttggcatatctactcaga |
240 |
Q |
| |
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||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||| || |||| ||||| |||| || | |||| |||| |
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| T |
43685111 |
aatgaggcacttgctaggatggcaagtactggattaggacctaacatgatattgtatttgatgggttcttacaatcttcatcttgccacagctacccaga |
43685210 |
T |
|
| Q |
241 |
tacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttc |
340 |
Q |
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||||||| |||||||||||||| | |||||||||||| | ||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
43685211 |
tacttctcatatcctctgcagctggaaatttcacacctcttgttgctgcttttattgcagattcttatattggtcgattcctaggtgttggaataggttc |
43685310 |
T |
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| Q |
341 |
ttctatcagtttcctggta |
359 |
Q |
| |
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| |||||||||||||||| |
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| T |
43685311 |
tattatcagtttcctggta |
43685329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 43712847 - 43712904
Alignment:
| Q |
377 |
gacttgaatatgcctattattaagtttaattttggga-tgaattgtatagatttgaat |
433 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||| |
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| T |
43712847 |
gacttgaatatgcccattattaagtttaattttgggagtgagttgaatagatttgaat |
43712904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 183 - 361
Target Start/End: Complemental strand, 26223 - 26045
Alignment:
| Q |
183 |
aacatgatattgtatttgatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
282 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||| |||||| | ||| |||||||| || |||| ||||||| ||||| |||| |||||| |
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| T |
26223 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatttgctgcagccagcaagttcatgcctgtgg |
26124 |
T |
|
| Q |
283 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
361 |
Q |
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|||||||||||||||||||||||| | ||||||||||| || |||||||| |||||||| || |||||||||||||||| |
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| T |
26123 |
ttggtgcttttattgcagattcttatttgggtcgattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
26045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 183 - 361
Target Start/End: Original strand, 25272008 - 25272186
Alignment:
| Q |
183 |
aacatgatattgtatttgatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
282 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||| |||||| | ||| |||||||| || ||||| ||||||| |||| |||| |||||| |
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| T |
25272008 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatctgctgcagccggcaagttcatgcctgtgg |
25272107 |
T |
|
| Q |
283 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
361 |
Q |
| |
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||||||||||| |||||||||||| | ||||| ||||| || |||||||| |||||||| || |||||||||||||||| |
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| T |
25272108 |
ttggtgcttttgttgcagattcttatttgggtagattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
25272186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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