View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7291_low_7 (Length: 533)

Name: NF7291_low_7
Description: NF7291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7291_low_7
NF7291_low_7
[»] chr4 (17 HSPs)
chr4 (45-516)||(32122731-32123222)
chr4 (1-46)||(711958-712003)
chr4 (1-47)||(46827763-46827809)
chr4 (1-46)||(960927-960972)
chr4 (1-42)||(3756303-3756344)
chr4 (1-45)||(32728356-32728400)
chr4 (1-44)||(17619209-17619252)
chr4 (1-45)||(49229721-49229765)
chr4 (1-44)||(55272433-55272476)
chr4 (9-47)||(28988470-28988508)
chr4 (1-46)||(1771323-1771368)
chr4 (1-46)||(28982879-28982924)
chr4 (8-44)||(36004168-36004204)
chr4 (1-45)||(48435636-48435680)
chr4 (1-48)||(55966403-55966450)
chr4 (1-47)||(23035977-23036023)
chr4 (1-47)||(35037002-35037048)
[»] chr2 (23 HSPs)
chr2 (390-518)||(33732077-33732206)
chr2 (1-47)||(43114554-43114600)
chr2 (1-46)||(966891-966936)
chr2 (1-46)||(16803966-16804011)
chr2 (1-46)||(16843248-16843293)
chr2 (1-45)||(18491704-18491748)
chr2 (1-42)||(11825711-11825752)
chr2 (1-42)||(41282031-41282072)
chr2 (1-44)||(12415517-12415560)
chr2 (1-44)||(12427577-12427620)
chr2 (1-42)||(4299477-4299518)
chr2 (1-49)||(34895798-34895846)
chr2 (1-45)||(14285675-14285719)
chr2 (381-468)||(19983829-19983917)
chr2 (1-44)||(1750414-1750457)
chr2 (1-47)||(4764783-4764829)
chr2 (1-47)||(12302310-12302356)
chr2 (1-42)||(6518526-6518566)
chr2 (1-42)||(7070418-7070459)
chr2 (342-398)||(3263456-3263512)
chr2 (5-45)||(4452026-4452066)
chr2 (8-44)||(16096747-16096783)
chr2 (8-44)||(42849910-42849946)
[»] chr8 (12 HSPs)
chr8 (1-47)||(35181513-35181559)
chr8 (4-47)||(19386630-19386673)
chr8 (1-46)||(34304786-34304831)
chr8 (1-45)||(18066775-18066819)
chr8 (8-47)||(10678204-10678243)
chr8 (4-45)||(16603686-16603727)
chr8 (1-43)||(16358890-16358933)
chr8 (9-47)||(33630058-33630096)
chr8 (1-47)||(36743540-36743586)
chr8 (1-42)||(30912619-30912660)
chr8 (1-42)||(42699259-42699300)
chr8 (19-47)||(30660817-30660845)
[»] chr3 (15 HSPs)
chr3 (1-47)||(4190322-4190368)
chr3 (1-47)||(9434121-9434167)
chr3 (1-46)||(10457949-10457994)
chr3 (1-44)||(34791829-34791872)
chr3 (1-46)||(52628034-52628079)
chr3 (1-45)||(25996267-25996311)
chr3 (1-44)||(51757593-51757636)
chr3 (1-47)||(54246205-54246251)
chr3 (1-45)||(25413680-25413724)
chr3 (425-510)||(25035334-25035417)
chr3 (9-46)||(47191090-47191127)
chr3 (19-47)||(24688477-24688505)
chr3 (8-44)||(36150130-36150166)
chr3 (19-47)||(46941050-46941078)
chr3 (1-49)||(54237091-54237139)
[»] chr1 (14 HSPs)
chr1 (1-46)||(14427345-14427390)
chr1 (1-46)||(44112675-44112720)
chr1 (1-44)||(35003294-35003337)
chr1 (1-44)||(48119628-48119671)
chr1 (1-45)||(38113252-38113296)
chr1 (1-45)||(41065152-41065196)
chr1 (1-44)||(38335918-38335961)
chr1 (1-46)||(45639789-45639834)
chr1 (1-45)||(45427802-45427846)
chr1 (1-44)||(35000170-35000213)
chr1 (1-44)||(46168383-46168426)
chr1 (1-45)||(45705824-45705868)
chr1 (1-47)||(5489773-5489819)
chr1 (395-503)||(9604491-9604600)
[»] chr7 (14 HSPs)
chr7 (1-47)||(27535288-27535334)
chr7 (1-47)||(40236916-40236962)
chr7 (1-44)||(31513287-31513330)
chr7 (1-43)||(31408690-31408732)
chr7 (8-46)||(41861672-41861710)
chr7 (4-45)||(24280656-24280697)
chr7 (392-503)||(33690172-33690283)
chr7 (8-47)||(33384867-33384906)
chr7 (1-44)||(39998408-39998451)
chr7 (1-42)||(10573751-10573792)
chr7 (9-45)||(5194296-5194332)
chr7 (1-45)||(9216301-9216345)
chr7 (1-41)||(26898459-26898499)
chr7 (9-45)||(43317442-43317478)
[»] chr5 (8 HSPs)
chr5 (1-47)||(30622775-30622821)
chr5 (1-44)||(32473451-32473494)
chr5 (393-490)||(15496010-15496108)
chr5 (10-47)||(7617130-7617167)
chr5 (1-45)||(17208073-17208117)
chr5 (1-44)||(33855100-33855143)
chr5 (9-44)||(41334728-41334763)
chr5 (1-46)||(18033980-18034025)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-42)||(45776-45817)
[»] chr6 (10 HSPs)
chr6 (1-42)||(27441544-27441585)
chr6 (1-46)||(33242401-33242446)
chr6 (1-44)||(33253913-33253956)
chr6 (1-47)||(7273392-7273438)
chr6 (11-45)||(31109289-31109323)
chr6 (1-47)||(26466796-26466842)
chr6 (9-47)||(26670074-26670112)
chr6 (1-42)||(24204044-24204085)
chr6 (11-47)||(3213397-3213433)
chr6 (1-45)||(9698390-9698434)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-44)||(35513-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (9-47)||(682-720)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-46)||(11249-11294)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-45)||(14245-14289)
scaffold0187 (1-45)||(24573-24617)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 45 - 516
Target Start/End: Original strand, 32122731 - 32123222
Alignment:
Q  45 tttcctaaccctaaggatagctcctaatggaatgatcagatgtgtttttaggtgtagatggggcaatattatttttctctttccattccctaaacctttc 144  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32122731 tttcctaaccctaaggatagctcctaatggaatgatcagaggtgtttttaggtgtagatggggcaatattatttttctctttccattccctaaacctttc 32122830  T
Q  145 tagtttcctctcattaatttgcccctttattggtagtaagatcttattattcataattttctacgtgaattttgagttca-------------------- 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |                         
T  32122831 tagtttcctctcattaatttgcccctttattggtagtaagatcttattattcataattttctacgttaattttgagtactaagcatctttataacttttt 32122930  T
Q  225 ctaaggtaatattgatactatcaacataaattatgttagtgtcatgtcttcctccaattgtggaggggtaactttcaagcttatgttgttgtacttatat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32122931 ctaaggtaatattgatactatcaacataaattatgttagtgtcatgtcttcctccaattgtggaggggtaactttcaagcttatgttgttgtacttatat 32123030  T
Q  325 ctatatatttcgactagctaagttctaacaatcatatcataatctgatttgagaaacaataaggttagattaggtgaatgcatttcctaaataaagaaag 424  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32123031 ctatatatttcgactagctaagttctaacaatcttatcataatctgatttgagaaacaataaggttagattaggtgaatgcatttcctaaatatagaaag 32123130  T
Q  425 aaattgagattatgaaaagcttactataagactactttccatgaccccaaaactaaagtaaactacttgctcatcataaagatgagctacct 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32123131 aaattgagattatgaaaagcttactataagactactttccatgactccaaaactaaagtaaactacttgctcatcataaagatgagctacct 32123222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 712003 - 711958
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  712003 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 711958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46827763 - 46827809
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  46827763 tacaatagagtgtatgattaaagggtgttcatgtaacattttccttt 46827809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 960927 - 960972
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  960927 tacaatagagtgtatgattaaagggtgttcatgtaacattttcctt 960972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3756303 - 3756344
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3756303 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32728400 - 32728356
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  32728400 tacaatagggtgtatgattaaaggatgttcatgtaacattttcct 32728356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17619209 - 17619252
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  17619209 tacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49229721 - 49229765
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  49229721 tacaatagggtgtatgattaaaggatgttcatataacattttcct 49229765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 55272433 - 55272476
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  55272433 tacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 28988508 - 28988470
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  28988508 ggtgtatgaataaagggtgttcatgtaacattttccttt 28988470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1771323 - 1771368
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||| ||||||| || ||||||||||||||||||||||||||||    
T  1771323 tacaatggggtgtaggaataaagggtgttcatgtaacattttcctt 1771368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28982879 - 28982924
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||    
T  28982879 tacaatagggtgtagaaataaagggtgttcatgtaacattttcctt 28982924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  8 gggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48435636 - 48435680
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||    
T  48435636 tacaatagggtgtgtgattaaatggtgttcatgtaacactttcct 48435680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 55966403 - 55966450
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctttc 48  Q
    |||||| || ||||||| ||||||||||| ||||||||||||||||||    
T  55966403 tacaatgggatgtatgaataaagggtgtttatgtaacattttcctttc 55966450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23036023 - 23035977
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||| || ||||||  |||||||||||||||||||||    
T  23036023 tacaatagggtgtaggaataaaggaggttcatgtaacattttccttt 23035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35037048 - 35037002
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  35037048 tacaatagagtgtatggttaaagggtgctcatgtaacatttttcttt 35037002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 33732077 - 33732206
Alignment:
Q  390 tagattaggtgaatgcatttcctaaataaa-gaaagaaattgagattatgaaaagcttactataagactactttccatgaccccaaaactaaagtaaact 488  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||||||| |||||||   |||| || ||||| ||||| | ||| ||||||| |||||    
T  33732077 tagattaggtgaatgcatttccttaacaaaagaaagaaattgagattatggaaagcttgtcataaaacaacttttcatgatctcaagactaaagaaaact 33732176  T
Q  489 acttgctcatcataaagatgagctacctga 518  Q
    |||  || |||||||  |||||||||||||    
T  33732177 actcacttatcataataatgagctacctga 33732206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43114600 - 43114554
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43114600 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 43114554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 966891 - 966936
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  966891 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 966936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16804011 - 16803966
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16804011 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 16803966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16843293 - 16843248
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16843293 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 16843248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18491748 - 18491704
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18491748 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 18491704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11825711 - 11825752
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11825711 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41282031 - 41282072
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41282031 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12415517 - 12415560
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  12415517 tacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12427577 - 12427620
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  12427577 tacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4299477 - 4299518
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  4299477 tacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34895798 - 34895846
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctttcc 49  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  34895798 tacaatagggtgtgtgattaaatggtgttcatgtaacactttcctttcc 34895846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14285719 - 14285675
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||    
T  14285719 tacaatagggtgtatgattaaagggtgtttgtgtaatattttcct 14285675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 468
Target Start/End: Complemental strand, 19983917 - 19983829
Alignment:
Q  381 caataaggttagattaggtgaatgcatttcctaaataaa-gaaagaaattgagattatgaaaagcttactataagactactttccatga 468  Q
    |||||| |||| || |||||||||||||||||||  ||| ||||||||| ||||||||||||||  ||  |||||||| | ||||||||    
T  19983917 caataaagttaaatcaggtgaatgcatttcctaagcaaaagaaagaaatagagattatgaaaagactatcataagactgcattccatga 19983829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1750457 - 1750414
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    |||||| ||||||| || ||||||||||||||||||||||||||    
T  1750457 tacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4764783 - 4764829
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||| || |||| |||||| |||||||||||||||||    
T  4764783 tacaatagggtgtaggaataaatggtgttgatgtaacattttccttt 4764829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12302310 - 12302356
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||| |||||||  | |||||||||||||||||||||||||||||    
T  12302310 tacaatggggtgtagaaataaagggtgttcatgtaacattttccttt 12302356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6518526 - 6518566
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  6518526 tacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7070459 - 7070418
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    |||||| || ||||||| ||||||||||||||||||||||||    
T  7070459 tacaatgggatgtatgaataaagggtgttcatgtaacatttt 7070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 3263512 - 3263456
Alignment:
Q  342 ctaagttctaacaatcatatcataatctgatttgagaaacaataaggttagattagg 398  Q
    ||||||||||||||||||| ||||||| | ||||||||  | ||||| |||||||||    
T  3263512 ctaagttctaacaatcataccataatccgttttgagaagtactaaggctagattagg 3263456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4452026 - 4452066
Alignment:
Q  5 atagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||| ||||| |||||||||| ||||||||||||||||||    
T  4452026 ataggatgtataattaaagggtattcatgtaacattttcct 4452066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 16096783 - 16096747
Alignment:
Q  8 gggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| || ||||||||||||||||||||||||||    
T  16096783 gggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 42849910 - 42849946
Alignment:
Q  8 gggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| || ||||||||||||||||||||||||||    
T  42849910 gggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35181559 - 35181513
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35181559 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 35181513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 19386630 - 19386673
Alignment:
Q  4 aatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19386630 aatagggtgtatgattaaagggtgttcatgtaacattttccttt 19386673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34304831 - 34304786
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  34304831 tacaatagggtgtatgattaaaggatgttcatgtaacattttcctt 34304786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18066775 - 18066819
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18066775 tacaatagaatgtatgattaaagggtgttcatgtaacattttcct 18066819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 10678204 - 10678243
Alignment:
Q  8 gggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacattttccttt 10678243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 16603686 - 16603727
Alignment:
Q  4 aatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  16603686 aataaggtgtatgattaaagggtgtgcatgtaacattttcct 16603727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16358890 - 16358933
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttc-atgtaacattttc 43  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  16358890 tacaatagggtgtatgattaaagggtcttcaatgtaacattttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 33630058 - 33630096
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  33630058 ggtgtatgattaaagggtgttcgtgtaacatttttcttt 33630096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36743540 - 36743586
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||| || |||| || |||||||||||||||||||||||||||||    
T  36743540 tacaatgggatgtaggaataaagggtgttcatgtaacattttccttt 36743586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30912619 - 30912660
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    |||||| ||||||| || ||||||||||||||||||||||||    
T  30912619 tacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42699300 - 42699259
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    |||||| ||||||| || ||||||||||||||||||||||||    
T  42699300 tacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 30660817 - 30660845
Alignment:
Q  19 taaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||||||||||    
T  30660817 taaagggtgttcatgtaacattttccttt 30660845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4190322 - 4190368
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4190322 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 4190368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9434167 - 9434121
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  9434167 tacaatagagtgtatgattaaagggtgttcatgtaacattttccttt 9434121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10457949 - 10457994
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  10457949 tacaatagggtgtatgattaaaaggtgttcatgtaacattttcctt 10457994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34791872 - 34791829
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  34791872 tacaatatggtgtatgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 52628034 - 52628079
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  52628034 tacaataggatgtatgattaaagggtgttcacgtaacattttcctt 52628079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25996311 - 25996267
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  25996311 tacaataagatgtatgattaaagggtgttcatgtaacattttcct 25996267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51757636 - 51757593
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||||||||||||||||||||||| |||||| |||||||    
T  51757636 tacaatagggtgtatgattaaagggtgtttatgtaatattttcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 54246205 - 54246251
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||| ||||||| || |||||||||||||||||||||||||||||    
T  54246205 tacaatggggtgtaggaataaagggtgttcatgtaacattttccttt 54246251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25413724 - 25413680
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||| ||||||| || |||||||||||||||||||||||||||    
T  25413724 tacaatggggtgtaggaataaagggtgttcatgtaacattttcct 25413680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 510
Target Start/End: Complemental strand, 25035417 - 25035334
Alignment:
Q  425 aaattgagattatgaaaagcttactataagactactttccatgaccccaaaactaaagtaaactacttgctcatcataaagatgag 510  Q
    |||||| ||||||| |||||||   |||| |||||||||||||| ||||| ||||||| ||||||||  ||||| |||| ||||||    
T  25035417 aaattgtgattatgtaaagcttc--ataaaactactttccatgatcccaagactaaaggaaactactcactcattataaggatgag 25035334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 47191090 - 47191127
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||| || ||||||||||||||||||||||||||||    
T  47191090 ggtgtaggaataaagggtgttcatgtaacattttcctt 47191127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 24688477 - 24688505
Alignment:
Q  19 taaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||||||||||    
T  24688477 taaagggtgttcatgtaacattttccttt 24688505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 36150166 - 36150130
Alignment:
Q  8 gggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    |||||||||| |||||||| |||||||||||||||||    
T  36150166 gggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 46941078 - 46941050
Alignment:
Q  19 taaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||||||||||    
T  46941078 taaagggtgttcatgtaacattttccttt 46941050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54237139 - 54237091
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctttcc 49  Q
    |||||| || |||| || ||||||||||||||||||||||||| |||||    
T  54237139 tacaatgggatgtaggaataaagggtgttcatgtaacattttcgtttcc 54237091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14427390 - 14427345
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14427390 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 14427345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44112720 - 44112675
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44112720 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 44112675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35003337 - 35003294
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35003337 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 48119671 - 48119628
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48119671 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38113252 - 38113296
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  38113252 tacaatagggtgtatgattaaagggtgttcatataacattttcct 38113296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41065196 - 41065152
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  41065196 tacaacagggtgtatgattaaagggtgttcatgtaacattttcct 41065152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38335961 - 38335918
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  38335961 tacaataaggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45639789 - 45639834
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||    
T  45639789 tacaataggatgtatgattaaagagtgttcatgtaacattttcctt 45639834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45427802 - 45427846
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||    
T  45427802 tacaatagggtgtatgattaaaaggtattcatgtaacattttcct 45427846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35000170 - 35000213
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  35000170 tacaatagagtgtatgattaaaaggtgttcatgtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46168426 - 46168383
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  46168426 tacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45705868 - 45705824
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||    
T  45705868 tacaatagaatgtatgattaaagggtgttcatataacattttcct 45705824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5489819 - 5489773
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||| || |||| || |||||||||||||||||||||||||||||    
T  5489819 tacaatgggatgtaggaataaagggtgttcatgtaacattttccttt 5489773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 503
Target Start/End: Complemental strand, 9604600 - 9604491
Alignment:
Q  395 taggtgaatgcatttcctaaataaa-gaaagaaattgagattatgaaaagcttactataagactactttccatgaccccaaaactaaagtaaactacttg 493  Q
    |||||||||||| | |||||| ||| ||||||||| ||||| ||  |||| ||   |||| |||||||||||| ||| ||| | ||||||||||||||      
T  9604600 taggtgaatgcactccctaaacaaaagaaagaaatagagatcatagaaagtttgtcataaaactactttccataacctcaagattaaagtaaactactca 9604501  T
Q  494 ctcatcataa 503  Q
    ||||||||||    
T  9604500 ctcatcataa 9604491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27535288 - 27535334
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27535288 tacaatagagtgtatgattaaagggtgttcatgtaacattttccttt 27535334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40236962 - 40236916
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  40236962 tacaataggatgtatgattaaagggtgttcatgtaacattttccttt 40236916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31513330 - 31513287
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  31513330 tacaatagggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31408690 - 31408732
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttc 43  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  31408690 tacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 41861710 - 41861672
Alignment:
Q  8 gggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  41861710 gggtgtatgaataaagggtgttcatgtaacattttcctt 41861672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 24280656 - 24280697
Alignment:
Q  4 aatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  24280656 aatagggtgtatgaataaagggtgttcacgtaacattttcct 24280697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 33690172 - 33690283
Alignment:
Q  392 gattaggtgaatgcatttcctaaataa-agaaagaaattgagattatgaaaagcttactataagactactttccatgaccccaaaactaaagtaaactac 490  Q
    |||||||||||| |||||| | || || |||||||||| | |||||| ||||| |||   |||||||||||| ||||||| ||| ||| |||||||||||    
T  33690172 gattaggtgaatacatttcttcaacaatagaaagaaatagggattataaaaagtttagcgtaagactacttttcatgacctcaagact-aagtaaactac 33690270  T
Q  491 ttgctcatcataa 503  Q
    |  ||||||||||    
T  33690271 tcactcatcataa 33690283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 33384906 - 33384867
Alignment:
Q  8 gggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  33384906 gggtgtatgattaaatgatgttcatgtaacattttccttt 33384867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39998451 - 39998408
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||    
T  39998451 tacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10573792 - 10573751
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||    
T  10573792 tacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5194296 - 5194332
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  5194296 ggtgtatgaataaatggtgttcatgtaacattttcct 5194332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9216345 - 9216301
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||||||| | || || |||||||||||||||||||||||||||    
T  9216345 tacaataggatataggaataaagggtgttcatgtaacattttcct 9216301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26898459 - 26898499
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattt 41  Q
    |||||| |||||||||| |||| ||||||||||||||||||    
T  26898459 tacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 43317478 - 43317442
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  43317478 ggtgtatgaataaatggtgttcatgtaacattttcct 43317442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30622775 - 30622821
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  30622775 tacaatagggtgtatgattaaaggatgttcatgtaacattttccttt 30622821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32473451 - 32473494
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  32473451 tacaataaggtgtatgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 393 - 490
Target Start/End: Original strand, 15496010 - 15496108
Alignment:
Q  393 attaggtgaatgcatttcctaaataaa-gaaagaaattgagattatgaaaagcttactataagactactttccatgaccccaaaactaaagtaaactac 490  Q
    |||||||||||| ||||| | || ||| |||||||||||| |||||  ||||||| |  |||||| ||||||||||| | |||||||||||||||||||    
T  15496010 attaggtgaatggatttctttaacaaaagaaagaaattgatattatctaaagcttgccgtaagacgactttccatgatcacaaaactaaagtaaactac 15496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 7617167 - 7617130
Alignment:
Q  10 gtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7617167 gtgtatgaataaagggtgttcatgtaacattttccttt 7617130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17208117 - 17208073
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||  |||||||||||||||||||||| |||||||||||||    
T  17208117 tacaataaagtgtatgattaaagggtgttcacgtaacattttcct 17208073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 33855100 - 33855143
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    |||||| ||||||| || ||||||||||||||||||||||||||    
T  33855100 tacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 41334728 - 41334763
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41334728 ggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18034025 - 18033980
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||| | ||||| || ||||||||||||||||||||||||||||    
T  18034025 tacaatggagtgtaggaataaagggtgttcatgtaacattttcctt 18033980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45776 - 45817
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45776 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27441585 - 27441544
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27441585 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33242446 - 33242401
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||    
T  33242446 tacaataaggtgtatgattaaatggtgttcatgtaacattttcctt 33242401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33253956 - 33253913
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  33253956 tacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7273392 - 7273438
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||    
T  7273392 tacaataaggtgtaggaataaagggtgttcatgtaacattttccttt 7273438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 31109289 - 31109323
Alignment:
Q  11 tgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||||||||||||||||||||||||||||||||    
T  31109289 tgtatgattaaagggtgttcatgtaacattttcct 31109323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26466842 - 26466796
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||| ||||||| || ||||||||||| |||||||||||||||||    
T  26466842 tacaatggggtgtaggaataaagggtgtttatgtaacattttccttt 26466796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 26670074 - 26670112
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||| || |||||||||||||||||||||||||||||    
T  26670074 ggtgtaggaataaagggtgttcatgtaacattttccttt 26670112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24204044 - 24204085
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 42  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  24204044 tacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 3213433 - 3213397
Alignment:
Q  11 tgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  3213433 tgtatgaataaagggtgtttatgtaacattttccttt 3213397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9698390 - 9698434
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||| || |||| || |||||||||||||||||||||||||||    
T  9698390 tacaatgggatgtaggaataaagggtgttcatgtaacattttcct 9698434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35513 - 35556
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 44  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||    
T  35513 tacaatatggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 720 - 682
Alignment:
Q  9 ggtgtatgattaaagggtgttcatgtaacattttccttt 47  Q
    |||||| || |||||||||||||||||||||||||||||    
T  720 ggtgtaggaataaagggtgttcatgtaacattttccttt 682  T

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Target: scaffold0385 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11294 - 11249
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctt 46  Q
    |||||| |||||||||| ||||| |||||||||| |||||||||||    
T  11294 tacaatggggtgtatgaataaagtgtgttcatgtgacattttcctt 11249  T

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Target: scaffold0187 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14245 - 14289
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||| |||||||  | |||||||||||||||||||||||||||    
T  14245 tacaatggggtgtagaaataaagggtgttcatgtaacattttcct 14289  T

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Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24573 - 24617
Alignment:
Q  1 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 45  Q
    |||||| |||||||  | |||||||||||||||||||||||||||    
T  24573 tacaatggggtgtagaaataaagggtgttcatgtaacattttcct 24617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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