View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_high_4 (Length: 400)
Name: NF7292_high_4
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 11964635 - 11965018
Alignment:
| Q |
1 |
gaaaagagcatctatactagtgaaactgaaagtcaaatatattcgacaagggaaggcttcacttacatttatggttctagtttcgaggattacgtgttta |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
11964635 |
gaaaagagcatctatactgatgaaactgaaagtcaaatatattcgacaagggaaggcttcacttacctttatggttctagtttcgagcattacgtgttta |
11964734 |
T |
|
| Q |
101 |
acacagctatattttggaaaggtaaggaacattggttcaagcatccagagatgcgtcttaagagcattgatctttcaagtaataacttaacaggtgaaat |
200 |
Q |
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|||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11964735 |
acacagctatattttggaaaggtatggaacgtgggttcaagcatccagagatgcgtcttaacagcattgatctttcaagtaataacttaacaggtgaaat |
11964834 |
T |
|
| Q |
201 |
accaaaaaagattggatatttggttgcattagtctctttgaatttatcaagaaacaatttgagcggagaaattccatctgaaattggaaatttagtttca |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
11964835 |
accaaaaaagattggatatttggttggattagtctctttgaatttatcaagaaacaatttgagcggaaaaataccatctgaaattggaaatttagtttca |
11964934 |
T |
|
| Q |
301 |
cttgatttcctcgacttgtcaagaaaccgtttcattggtaaaattccttccactctttccaagatcgatcggctacaaatttta |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11964935 |
cttgatttcctcgacttgtcaagaaaccgtttcattggtaaaattccttccactctttccaagatcgatcggctagaaatttta |
11965018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 11850910 - 11850527
Alignment:
| Q |
1 |
gaaaagagcatctatactagtgaaactgaaagtcaaatatattcgacaagggaaggcttcacttacatttatggttctagtttcgaggattacgtgttta |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||||||||||| |||||| | |||| ||||||| |||| | ||| ||||| |
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| T |
11850910 |
gaaaagagcatcaatactagtgaaactgaaagtcacatgtattcgacaagtcaaggctacttttacgattatggtgtatttttcaatagttatacgttta |
11850811 |
T |
|
| Q |
101 |
acacagctatattttggaaaggtaaggaacattggttcaagcatccagagatgcgtcttaagagcattgatctttcaagtaataacttaacaggtgaaat |
200 |
Q |
| |
|
||| | || |||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11850810 |
acatacctttattctggaaaggtatggaacgtgggttcaagcatccagagatgcgtcttaagagcattgatctttcaagaaataacttaacaggtgaaat |
11850711 |
T |
|
| Q |
201 |
accaaaaaagattggatatttggttgcattagtctctttgaatttatcaagaaacaatttgagcggagaaattccatctgaaattggaaatttagtttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
11850710 |
accaaaaaagattggatatttggttggattagtctctttgaatttatcaagaaacaatttgagcggaaaaatcccatctgaaattggaaatttagtttca |
11850611 |
T |
|
| Q |
301 |
cttgatttcctcgacttgtcaagaaaccgtttcattggtaaaattccttccactctttccaagatcgatcggctacaaatttta |
384 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||| |||||||| |
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|
| T |
11850610 |
cttgatttcctcgacttgtcaagaaaccttttctttggtaaaattccttctactctttccaatatcgatcggcttgaaatttta |
11850527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 11930349 - 11930721
Alignment:
| Q |
1 |
gaaaagagcatctatactagtgaaactgaaagtcaaatatattcgacaagggaaggcttcacttacatttatggttctagtttcgaggattacgtgttta |
100 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||||||| |||||| |||||| | |||||||| | | | ||| | ||||| ||||||| |
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|
| T |
11930349 |
gaaaagagtatcaatactagtgaa-ctgaaagtcaaatatatctgacaagtgaaggcaacttttacatttttcttataattttttatgattatgtgttta |
11930447 |
T |
|
| Q |
101 |
acacagctatattttggaaaggtaaggaacattggttcaagcatccagagatgcgtcttaagagcattgatctttcaagtaataacttaacaggtgaaat |
200 |
Q |
| |
|
||| | || |||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
11930448 |
acataactttattctggaaaggtatggaacgtgggttcaagcatccagagatgcgtcttaagagcattgatctttctagtaataacttaacaggtgaaat |
11930547 |
T |
|
| Q |
201 |
accaaaaaagattggatatttggttgcattagtctctttgaatttatcaagaaacaatttgagcggagaaattccatctgaaattggaaatttagtttca |
300 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
11930548 |
accacaaaagattggatatttggttggattagtctctttgaatttatcaagaaacaatttgagcggagaaatcccatctgaaattggaaatttagtttca |
11930647 |
T |
|
| Q |
301 |
cttgatttcctcgacttgtcaagaaaccgtttcattggtaaaattccttccactctttccaagatcgatcggct |
374 |
Q |
| |
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||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
11930648 |
cttgatttcctcgacttatcaagaaaccatttctttggtaaaattccttccactctttccaggatcgatcggct |
11930721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 20759514 - 20759377
Alignment:
| Q |
135 |
gttcaagcatccagagatgcgtcttaagagcattgatctttcaagtaataacttaacaggtgaaataccaaaaaagattggatatttggttgcattagtc |
234 |
Q |
| |
|
||||||| |||| ||| ||| ||| |||||||||||||| ||| | ||||| ||||| || ||| |||||||| | || |||| | | | | ||| || |
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|
| T |
20759514 |
gttcaagaatcctgagttgcttctgaagagcattgatctgtcaggaaataatttaaccggagaagtaccaaaagaaatcggatctctattcggattggtg |
20759415 |
T |
|
| Q |
235 |
tctttgaatttatcaagaaacaatttgagcggagaaat |
272 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
20759414 |
tctttgaatttatcaaggaacaatttgagtggagaaat |
20759377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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