View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_high_5 (Length: 397)
Name: NF7292_high_5
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 8291712 - 8292077
Alignment:
| Q |
16 |
gaaatcataatggtaatttagttgtgaagaaacttttctttagaggaggcagctaactctaagcagatctttttaatttaagctatcttaataattttag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8291712 |
gaaatcataatggtaatttagttgtgaagaaacttttctttagaggaggcagctaactctaagcagatcttttaaatttaagctatcttaataattttag |
8291811 |
T |
|
| Q |
116 |
tctatgcttttgtcataatatgcaattataaatcttctatatgtactatactagtatattgagaatctattcaagttgcaacacacaataatgttataaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8291812 |
tctatgcttttgtcataatatgcaattataaatcttctatatgtactatactagtatattgagaatctattcaagttgcaacacacaataatgttataaa |
8291911 |
T |
|
| Q |
216 |
ctattttatgtacaagactgtgagtgtagctttacttgtgctcctttattttaaacattttaaagggtctcactaaaatttattttaggcatttcaataa |
315 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8291912 |
ctattttatgtacaagac--tgagtgtagctttacttgtgctcctttattttaaacattttaaagggtctcactaaaatttattttaggcatttcaataa |
8292009 |
T |
|
| Q |
316 |
atttggtcgaccttttcttcattcgtcattattctctagtgtcgtaaatggatcttgtgtcttgggtt |
383 |
Q |
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| T |
8292010 |
atttggtcgaccttttcttcattcgtctctattctctagtgtcgtaaatgaatcttgtgttttgggtt |
8292077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 120 - 364
Target Start/End: Original strand, 33240171 - 33240431
Alignment:
| Q |
120 |
tgcttttgtcataatatgcaattataaatcttctata-tgtactatacta--gtatattgagaatctatt--caagttgcaacacacaataatgttataa |
214 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33240171 |
tgcttttgtcataatatgcaattataaattttctataatgtaatatactatagtatattgagaatctatatgcaagttgcaacacacaataatgttataa |
33240270 |
T |
|
| Q |
215 |
actattttatgtacaagactgtgagtgtagctttacttgtgctccttt---------attttaaacat-----tttaaagggtctcactaaaatttattt |
300 |
Q |
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|||| ||||||||||||||| | ||||| || |||||||||| ||| ||||| | || ||||||||||||||||||||||||||| |
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| T |
33240271 |
acta-tttatgtacaagactat--gtgtatgttaacttgtgctctttttttattttatttttatatattttaatttaaagggtctcactaaaatttattt |
33240367 |
T |
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| Q |
301 |
taggcatttcaataaatttggtcgaccttttcttcattcgtcattattctctagtgtcgtaaat |
364 |
Q |
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| T |
33240368 |
taggcatttaaataaatttggtcgaccttgtcttcatttgtctctagtctctattgtcgtaaat |
33240431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 33246281 - 33246383
Alignment:
| Q |
111 |
tttagtctatgcttttgtcataatatgcaattataaatcttctatatgtactatactagtatattgagaatctattcaagttgcaacacacaataatgtt |
210 |
Q |
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| T |
33246281 |
tttagtctatgcttttgtaataatatgcaattataaatcttctatatgtaatatactattatattgagaattta-------tgcaacacacaataatgtt |
33246373 |
T |
|
| Q |
211 |
ataaactatt |
220 |
Q |
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|||||||||| |
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| T |
33246374 |
ataaactatt |
33246383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 33238003 - 33237950
Alignment:
| Q |
22 |
ataatggtaatttagttgtgaagaaacttttctttagaggaggcagctaactct |
75 |
Q |
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|||||||||||||||||||||| || |||||| || ||||||| | |||||||| |
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| T |
33238003 |
ataatggtaatttagttgtgaacaagcttttccttggaggaggtaactaactct |
33237950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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