View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_high_7 (Length: 381)
Name: NF7292_high_7
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 718617 - 718252
Alignment:
| Q |
1 |
tgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgcttgtgcaactaaattaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
718617 |
tgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgctagtgcaactaaattaact |
718518 |
T |
|
| Q |
101 |
atggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcacccttacataaacatatacaagcaaattacacgaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
718517 |
atggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcatccttacataaacatatacaagcaaattacacgaata |
718418 |
T |
|
| Q |
201 |
aaatttctnnnnnnnnnncatgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaa |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
718417 |
aaatttct-aaaaaaaaacatgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaa |
718319 |
T |
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| Q |
301 |
gacttttgtgtggctatcaatgacaccaagaatggtggtatgta-actcttttaaattcacaatatt |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
718318 |
gacttttgtgtggctatcaatgacaccaagaatggtggtatgtatgctcttttaaattaacaatatt |
718252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 703092 - 702982
Alignment:
| Q |
234 |
cttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaat |
333 |
Q |
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| T |
703092 |
cttgtttgtgacagccttcttagctttagcatcttgtgcctttgcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaat |
702993 |
T |
|
| Q |
334 |
ggtggtatgta |
344 |
Q |
| |
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||||||||||| |
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| T |
702992 |
ggtggtatgta |
702982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 234 - 344
Target Start/End: Original strand, 712346 - 712456
Alignment:
| Q |
234 |
cttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaat |
333 |
Q |
| |
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||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
712346 |
cttgtttgtgacagccttcttagctttagcatcttgtgcctttgcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaat |
712445 |
T |
|
| Q |
334 |
ggtggtatgta |
344 |
Q |
| |
|
||||||||||| |
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|
| T |
712446 |
ggtggtatgta |
712456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 711366 - 711242
Alignment:
| Q |
220 |
atgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatca |
319 |
Q |
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||||||| || |||||||||| | ||||||||| | || || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
711366 |
atgaagagtatttacttgtttttcacagccttcctagcattggcatcttgtgcctttgcatttgatcctagccctctacaagacttttgtgtggctatca |
711267 |
T |
|
| Q |
320 |
atgacaccaagaatggtggtatgta |
344 |
Q |
| |
|
|||||||||| | ||||||||||| |
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| T |
711266 |
atgacaccaaaacgggtggtatgta |
711242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 344
Target Start/End: Original strand, 721743 - 721867
Alignment:
| Q |
220 |
atgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatca |
319 |
Q |
| |
|
||||||| ||||||||||||| | ||| | ||||| || | |||| | ||||||||| || |||| ||| ||||| ||||| ||||||||||||| || |
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| T |
721743 |
atgaagagtacttacttgtttttcacaactttcttagcaatgacatcttttgcctttgcattagatctcagtcctctgcaagatttttgtgtggctacca |
721842 |
T |
|
| Q |
320 |
atgacaccaagaatggtggtatgta |
344 |
Q |
| |
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| |||| ||||| || |||||||| |
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|
| T |
721843 |
acgacatcaagacgggcggtatgta |
721867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 5279170 - 5279096
Alignment:
| Q |
270 |
tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta |
344 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||| |
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| T |
5279170 |
tgcctttgcttatgatcccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta |
5279096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 5281917 - 5281991
Alignment:
| Q |
270 |
tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta |
344 |
Q |
| |
|
||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||| |
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|
| T |
5281917 |
tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta |
5281991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 5287178 - 5287104
Alignment:
| Q |
270 |
tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta |
344 |
Q |
| |
|
||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||| |
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|
| T |
5287178 |
tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta |
5287104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 20353314 - 20353388
Alignment:
| Q |
270 |
tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta |
344 |
Q |
| |
|
||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||| |
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|
| T |
20353314 |
tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta |
20353388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 20358571 - 20358497
Alignment:
| Q |
270 |
tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta |
344 |
Q |
| |
|
||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||| |
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|
| T |
20358571 |
tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta |
20358497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 6236157 - 6236083
Alignment:
| Q |
270 |
tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta |
344 |
Q |
| |
|
||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||| |
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|
| T |
6236157 |
tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta |
6236083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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