View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_low_1 (Length: 543)
Name: NF7292_low_1
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 25574828 - 25574301
Alignment:
| Q |
1 |
ccacaaaaccataaccttcttttttcacctgaacattacaatgcccaaatctaccaaaaactcgctcaagttcatctctacaaacacgttccgatagttt |
100 |
Q |
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| T |
25574828 |
ccacaaaaccataaccttcttttttcacctgaacattacaacgcccaaatctaccaaaaactcgctcaagttcatctctacaaacacgttccgatagttt |
25574729 |
T |
|
| Q |
101 |
accgaaatacaacgacatctacaataataaacaaacacatttaatagtaagnnnnnnn-tattgaattccattccaagcaagtaaattatgaagcaccga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
25574728 |
accgaaatacaacgacatctacaataataaacaaacacatttaatagtaagaaaaaaaatattgaattccattccaagcaagtaaattatgaagcaccaa |
25574629 |
T |
|
| Q |
200 |
cagagacacagctcacaaatcgacatgaataataatttnnnnnnntaaataaattatttgaacgtaatcacatgtatgtattggtgtcatgtcaatgtca |
299 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25574628 |
cacagacacagctcacaaatcgacatgaataataatttaaaaaaataaataaattatttgaacgtaatcacatgtatgtatcggtgtcatgtcaatgtca |
25574529 |
T |
|
| Q |
300 |
gactcagacacgtctttgatcagaggtgtcagtactaccacaaacatgaaagtaatttcatttacaatataaaaatgtatgcatagacgaacttaataac |
399 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
25574528 |
gactcagacacgtctttgatcagaggtgttagtactaccacaaacatgaaagtaatttcatgtaaaatataaaaatgtatgcatagacgaacttaataac |
25574429 |
T |
|
| Q |
400 |
atattttcgttttattttataatgacnnnnnnnggaagagtaattttgatagaagacaggttaaaatgcatgaataaaaatagtaagaaaggataaaccc |
499 |
Q |
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| T |
25574428 |
atattttcgttttatttcataatgacaaaaaatggaagagtaattttgatcga--acaggttaaaatgcatgaataaaaatagtaagaaaagataaaccc |
25574331 |
T |
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| Q |
500 |
taaaaacaaggcatgaaaatatcgaacatg |
529 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
25574330 |
taaaaacaaggcatgaaaatatcgaacatg |
25574301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 9895168 - 9895196
Alignment:
| Q |
246 |
aaataaattatttgaacgtaatcacatgt |
274 |
Q |
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| T |
9895168 |
aaataaattatttgaacgtaatcacatgt |
9895196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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