View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_low_11 (Length: 326)
Name: NF7292_low_11
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 134 - 303
Target Start/End: Complemental strand, 49599098 - 49598929
Alignment:
| Q |
134 |
aattgtcaccgcctcttccaaaaagaaaaacaataaggttatctcttttcaacaatattattccaattccaaagccaatacaactcaatgattcatactt |
233 |
Q |
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| T |
49599098 |
aattgtcaccgcctcttccaaaaagaaaaacaataaggttatctcttttcaacaatattattccaattccaaagccaatacaactcaatgattcatactt |
49598999 |
T |
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| Q |
234 |
cacaattgtctaatttatattatgctttttaatttttacagaaaaaattgactcatgttaccaaggggaa |
303 |
Q |
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| T |
49598998 |
cacaattgtctaatttatattatgctttttaatttttacagaaaaaattgactcatgttaccaaggggaa |
49598929 |
T |
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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 49599221 - 49599152
Alignment:
| Q |
11 |
gaacctgtgtttatcatatacccgtttcgtcacagtcagaggaacccaatcctctcctttgcagcgaaaa |
80 |
Q |
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| T |
49599221 |
gaaccagtgtttatcatatacccgtttcgtcacagtcagaggaacccaatcctctcctttgcagcgaaaa |
49599152 |
T |
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