View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7292_low_15 (Length: 266)
Name: NF7292_low_15
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 14394252 - 14394003
Alignment:
| Q |
1 |
tcaagaatgtgtatctgaatacataagcttcataacatccgaagcaaacgatcgatgccaaagagaacaaagaaaaacagttacagcagaagatatacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14394252 |
tcaagaatgtgtatccgaatacataagcttcataacatccgaagcaaacgatcgatgccaaagagaacaaagaaaaacagttacagcagaagatatacta |
14394153 |
T |
|
| Q |
101 |
tgggcaatggggaaacttggttttgatgattatgttcatcctttaacattttaccttcaacgtttccgtgaaagtgaaggtgaacctgcttctgttcgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14394152 |
tgggcaatggggaaacttggttttgatgattatgttcatcctttaacattttaccttcaacgttaccgtgaaagtgaaggtgaacctgcttctgttcgac |
14394053 |
T |
|
| Q |
201 |
gctcttcttctcttgctttgcctccttcttttccattattgcagcagcat |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14394052 |
gcacttcttctcttgctttgcctccttcttttccattaatgcagcagcat |
14394003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University