View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_low_2 (Length: 476)
Name: NF7292_low_2
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 2 - 460
Target Start/End: Complemental strand, 26072805 - 26072350
Alignment:
| Q |
2 |
actatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaagatggagtatc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072805 |
actatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatcttgatcctaggtacaagatggagtatc |
26072706 |
T |
|
| Q |
102 |
ttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgattattacaagtc |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072705 |
ttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgataattgctaaactgcatgaactcataggcaaattgtttgattattacaagtc |
26072606 |
T |
|
| Q |
202 |
actgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttggaggtaatgtg |
301 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||| |
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| T |
26072605 |
agtgcagcctattggttttgtttctagtgattcctcctctagctccactaatacaatgcaaagtgatgttg---ttactttcggtgttggaggtaatgtg |
26072509 |
T |
|
| Q |
302 |
gatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggttagatacttagaagatgaggttgaagatgatt |
401 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26072508 |
gatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagtgagttggtaagatacttagaagatgaggttgaagatgatt |
26072409 |
T |
|
| Q |
402 |
atgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctt |
460 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072408 |
atgaatgatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctt |
26072350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 2 - 460
Target Start/End: Original strand, 1670897 - 1671352
Alignment:
| Q |
2 |
actatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaagatggagtatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670897 |
actatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatcttgatcctaggtacaagatggagtatc |
1670996 |
T |
|
| Q |
102 |
ttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgattattacaagtc |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1670997 |
ttgatttttgttttggttggatgtatggggtggaaaaggctaaaatgataattgctaaactgcatgaactcataggcaaattgtttgattattacaagtc |
1671096 |
T |
|
| Q |
202 |
actgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttggaggtaatgtg |
301 |
Q |
| |
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| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
1671097 |
agtgcagcctattggttttgtttctagtgattcctcctctagctccactaatacaatgcaaagtgatgttg---ttactttcggtgttggaggtaatgtg |
1671193 |
T |
|
| Q |
302 |
gatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggttagatacttagaagatgaggttgaagatgatt |
401 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1671194 |
gatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagtgagttggtaagatacttagaagatgaggttgaagatgatt |
1671293 |
T |
|
| Q |
402 |
atgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctt |
460 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1671294 |
atgaaggatttgaacatttgaaatggtggaaaagtaagagcacaaagtacattgttctt |
1671352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 460
Target Start/End: Complemental strand, 44271582 - 44271138
Alignment:
| Q |
2 |
actatgaaagctaaatttgaaaagtattggagtgatgagaatatcaataatctgttgtttgtagctgtttatcttgatcctaggtacaagatggagtatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
44271582 |
actatgaaagctaaatttgaaaagtattggagtgatgagaatatcaattatctgttgtttgtagctgtttatattgatcctaggtacaagatggagtatc |
44271483 |
T |
|
| Q |
102 |
ttgatttgtgttttggttggatgtatggggtggaaaaggctaaaatgatcattgctaaactgcatgaactcataggcaaattgtttgattattacaagtc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| |||| |||| |||| || | ||||| ||||||| ||||||||||||||| |||||| |
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|
| T |
44271482 |
ttgatttgtgttttggttggatgtatggaaagnaaa-ggctgcc-tgataattga-aacccgcatgc-ctcatagc--aattgtttgattatt-caagtc |
44271390 |
T |
|
| Q |
202 |
actgcggcctattggttttgtttctagtgattcctcctctagctccattaatacaatacaaagtgatgttgttattactttgggtgttggaggtaatgtg |
301 |
Q |
| |
|
| | ||||||| |||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
44271389 |
a--ggcacctattg-ttttgtttctagtg-ttcctactctagctccactaatacaatgcaaagtgatgttgtta---ctttcggtgttggaggtaatgtg |
44271297 |
T |
|
| Q |
302 |
gatatggatgctttacaccgaagaagggttaaaagaaggcaaagtgaacataaatcaagtgagttggttagatacttagaagatgaggttgaagatgatt |
401 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
44271296 |
gatatggatgctttgcaccgaagaagggttaaaagaaggcaaagtgaacataactcaagttagttggtaagatacttagaagatgaggttgaagatgatt |
44271197 |
T |
|
| Q |
402 |
atgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44271196 |
atgaaggatttgaacttttgaaatggtggaaaagtaagagcacaaagtacattgttctt |
44271138 |
T |
|
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