View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_low_3 (Length: 445)
Name: NF7292_low_3
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 34422414 - 34421995
Alignment:
| Q |
20 |
catattgcatgagttttcagtttgtactttccttttttgcttacttacggtttaaaaagattgtgtaaattaattaacaagaatatgtttggttattttg |
119 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422414 |
catattgcatgagtt---agtttgtactttccttttttgcttacttacggtttaaaaagattgtgtaaattaattaacaagaatatgtttggttattttg |
34422318 |
T |
|
| Q |
120 |
attaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagccca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422317 |
attaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagccca |
34422218 |
T |
|
| Q |
220 |
tgctgaaaaggtgtttcaaatggtgagtgcaaccaacatcaactaa-nnnnnnnattcttcattcagcgtctatggttctcttt-aattaataactataa |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34422217 |
tgctgaaaaggtgtttcaaatggtgagtgcaaccaacatcaactaattttttttattcttcattcagcgtctatggttctctttaaattaataactataa |
34422118 |
T |
|
| Q |
318 |
aatcttttcaaatacatgtattttgtatattcttaattttannnnnnnncccttgataaatatgatccaaaaatgttggggtagtttatacatggttttg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34422117 |
aatcttttcaaatacatgtattttgtatattcttaatttaatttattttcccttgataaatatgatccaaaaatgttggggtagtttatacatggttttg |
34422018 |
T |
|
| Q |
418 |
ctttcaattgggtctctgctact |
440 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
34422017 |
ctttcaattgggtctctactact |
34421995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 34430625 - 34430466
Alignment:
| Q |
84 |
gtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacac |
183 |
Q |
| |
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|||||||||||| |||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | || |
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| T |
34430625 |
gtaaattaattagcaagaatatgcttggttgttttgataaaaatagtatattagagaaagcacctgcagcaaaaggcatgttctcttttcttaaagatac |
34430526 |
T |
|
| Q |
184 |
gcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggt |
243 |
Q |
| |
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||| ||| |||||||||||||||||||||| ||||||| ||| || ||| ||||||| |
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| T |
34430525 |
aactggagtacaagatagtcctcaacttcaagctcatgctgcaaaagtttttgaaatggt |
34430466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 34685780 - 34685946
Alignment:
| Q |
82 |
gtgtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaac |
181 |
Q |
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|
||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
34685780 |
gtgtaaattaaataacaagaatatgtttggttgctttaattaaaatagtatattagagaaagcacctgcagcaaagggtatgttctcttttcttaaggac |
34685879 |
T |
|
| Q |
182 |
acgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
248 |
Q |
| |
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| | | ||| |||||||||| ||||| ||||| || |||||||| || ||| ||||||||||| |
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|
| T |
34685880 |
tcaacgggagtacaagatagtccccaactccaagctcacgctgaaaaagtttttggaatggtgagtg |
34685946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 34678640 - 34678797
Alignment:
| Q |
91 |
aattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgag |
190 |
Q |
| |
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||||||||| ||||| ||||||| ||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| || | ||| |
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| T |
34678640 |
aattaacaataatatttttggttgctttatttaaaacagtatattggagaaagcacctgcagcaaagggtatgttctcttttcttaaggactcagctgga |
34678739 |
T |
|
| Q |
191 |
gtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
248 |
Q |
| |
|
||| ||||||||||| ||||||||| |||||||| ||| || ||| ||||||||||| |
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|
| T |
34678740 |
gtacaagatagtcctaaacttcaagtccatgctggaaaagtttttggaatggtgagtg |
34678797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 18270770 - 18270902
Alignment:
| Q |
115 |
ttttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaa |
214 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | | ||| ||| ||||||||||| |||| ||| |
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| T |
18270770 |
tttttattaaaatagtatattagacaaagcacctgcagcaaagggcatgttctcttttcttaaggattcagctggagtacaagatagtcctaaactccaa |
18270869 |
T |
|
| Q |
215 |
gcccatgctgaaaaggtgtttcaaatggtgagt |
247 |
Q |
| |
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||||| |||||||| || ||| |||||||||| |
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| T |
18270870 |
gcccacgctgaaaaagtttttggaatggtgagt |
18270902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 27842566 - 27842420
Alignment:
| Q |
83 |
tgtaaattaattaacaagaatatgtttggttat-tttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaac |
181 |
Q |
| |
|
||||||||||||| ||| ||||||||| || | ||| |||||| ||| |||||||||||||||||||| ||||| ||| ||||||||||||||||| || |
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| T |
27842566 |
tgtaaattaattagcaaaaatatgttttattttattttattaaaatagcatattagagaaagcacctgcggcaaaaggcttgttctcttttcttaaggac |
27842467 |
T |
|
| Q |
182 |
acgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaa |
228 |
Q |
| |
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| ||| ||| |||||||||||||||| ||||| || |||||||| |
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| T |
27842466 |
tcagctggagtacaagatagtcctcaactccaagctcacgctgaaaa |
27842420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 34649171 - 34649324
Alignment:
| Q |
91 |
aattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgag |
190 |
Q |
| |
|
||||||||| ||| | ||||| | |||||||||| ||||||||| ||||||||||||||| |||||| ||| |||||||||| ||| | || ||| |
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| T |
34649171 |
aattaacaataatgtttttggctgctttgattaaaatagtatatttgagaaagcacctgcaacaaaggatatgctctcttttctgaagggctcgactgga |
34649270 |
T |
|
| Q |
191 |
gtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtg |
244 |
Q |
| |
|
||| |||||||||| |||| ||||| ||||||||| | || ||| |||||||| |
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|
| T |
34649271 |
gtacaagatagtcccgaactccaagctcatgctgaacaagtttttgaaatggtg |
34649324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 2068268 - 2068127
Alignment:
| Q |
107 |
tttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctc |
206 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||| |
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|
| T |
2068268 |
tttggttattttgattgaaatagtatattggagaaagcccctgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtccta |
2068169 |
T |
|
| Q |
207 |
aacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
248 |
Q |
| |
|
|||| ||| ||||||||||| || ||| ||||||||||| |
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|
| T |
2068168 |
aactccaaagtcatgctgaaaaagtttttggaatggtgagtg |
2068127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 40847578 - 40847524
Alignment:
| Q |
120 |
attaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttct |
174 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||| |||||||| |||||||| |
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|
| T |
40847578 |
attaaaatagtatattggataaagcacctgcagcaaaaggcatgttttcttttct |
40847524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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