View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7292_low_8 (Length: 377)
Name: NF7292_low_8
Description: NF7292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7292_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 24 - 366
Target Start/End: Complemental strand, 9503033 - 9502686
Alignment:
| Q |
24 |
agcatccaattatctatctagttgtatactgcctagaaattagtactatcaaatatattaagaaaatcaaatatagtactac-----cttatgatcagaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9503033 |
agcatccaattatctatctagttgtatactgcctagaaattagtactatcaaatatattaagaaaatcaaatatagtactacagtaccttatgatcagaa |
9502934 |
T |
|
| Q |
119 |
gacaactccacgacttcaccacctcgtcccaaaacggctctagaatcaccacaattcgcaacaacaatctcctctttaacaacaaccgccacaacagccg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9502933 |
gacaactccacgacttcaccacctcgtcccaaaacggctctagaatcaccacaattcgcaacaacaatctcctctttaacaacaaccgccacaacagccg |
9502834 |
T |
|
| Q |
219 |
tggatcccacggtcctaaccgcggcatcacccgccacctccctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctc |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9502833 |
tggatcccacggtcctaaccgtggcatcacccgccacctccctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctc |
9502734 |
T |
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| Q |
319 |
ccaacacatctcgacctcctccgccacaatcctatacaacctctctct |
366 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9502733 |
ccaaaacatctcaacctcctccgccacaatcctatacaacctctctct |
9502686 |
T |
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