View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_high_13 (Length: 385)

Name: NF7293_high_13
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_high_13
NF7293_high_13
[»] chr7 (11 HSPs)
chr7 (163-271)||(6242865-6242973)
chr7 (141-271)||(6325675-6325805)
chr7 (158-271)||(6346286-6346399)
chr7 (170-271)||(6333181-6333282)
chr7 (311-369)||(6333782-6333840)
chr7 (314-369)||(6220940-6220995)
chr7 (158-271)||(6219711-6219827)
chr7 (311-369)||(6242438-6242496)
chr7 (158-270)||(6219198-6219310)
chr7 (316-369)||(6326307-6326357)
chr7 (68-108)||(6243006-6243046)
[»] scaffold2079 (1 HSPs)
scaffold2079 (311-369)||(654-715)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 6242973 - 6242865
Alignment:
Q  163 aataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaataaatc 262  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  6242973 aataacattcttgatcctttttggaatccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatc 6242874  T
Q  263 caagcaatt 271  Q
    |||||||||    
T  6242873 caagcaatt 6242865  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 141 - 271
Target Start/End: Original strand, 6325675 - 6325805
Alignment:
Q  141 taccactctcactcttcccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaa 240  Q
    ||||||||||| | || ||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||    
T  6325675 taccactctcagttttaccctcaaaaactttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaa 6325774  T
Q  241 catccacaaacccaaataaatccaagcaatt 271  Q
     ||||| ||||||||||||||||| ||||||    
T  6325775 gatccaaaaacccaaataaatccatgcaatt 6325805  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 6346286 - 6346399
Alignment:
Q  158 ccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaat 257  Q
    ||||||| ||||||||||||||||| ||||||   ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||     
T  6346286 ccctcaaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagcccaaaa 6346385  T
Q  258 aaatccaagcaatt 271  Q
    ||||||||||||||    
T  6346386 aaatccaagcaatt 6346399  T

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Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 6333181 - 6333282
Alignment:
Q  170 ttcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaataaatccaagcaa 269  Q
    ||||||||||||| ||||||  ||||||||| ||| |||||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  6333181 ttcttgatcctttctggaatcaattgatagatttcatttttactcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaa 6333280  T
Q  270 tt 271  Q
    ||    
T  6333281 tt 6333282  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 6333782 - 6333840
Alignment:
Q  311 ctccaaattcagccattgttcttcaaactcaacttttgatgagtacaacacattcttca 369  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6333782 ctcctaattcagccattgttcttcaaactaaacttttgatgagtacaacacattcttca 6333840  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 6220995 - 6220940
Alignment:
Q  314 caaattcagccattgttcttcaaactcaacttttgatgagtacaacacattcttca 369  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  6220995 caaattctgccattgttcttcaaactcaacttttgatgagtacaacacatgcttca 6220940  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 6219827 - 6219711
Alignment:
Q  158 ccctcaataacattcttgatcctttttggaat---tcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaaccca 254  Q
    ||||||| ||| ||||||||||||| ||||||   |  ||||||||| ||||||  ||||| |||||||||||||| ||||| ||| |||||||| | ||    
T  6219827 ccctcaaaaactttcttgatcctttctggaatcaatatttgatagagctcttttcgattctcatagcacatcaaagaaaagagtaagatccacaagcaca 6219728  T
Q  255 aataaatccaagcaatt 271  Q
    || ||||||||||||||    
T  6219727 aaaaaatccaagcaatt 6219711  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 6242496 - 6242438
Alignment:
Q  311 ctccaaattcagccattgttcttcaaactcaacttttgatgagtacaacacattcttca 369  Q
    |||| ||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  6242496 ctcctaattctgccgttgttcttcaaacttaacttttgataagtacaacacattcttca 6242438  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 6219310 - 6219198
Alignment:
Q  158 ccctcaataacattcttgatcctttttggaattcattgatagagttcttttttattcttatagcacatcaaagcaaagattaacatccacaaacccaaat 257  Q
    |||||||||  ||||||||||||||  |||||   ||||||||||||||||  ||| ||||||| |||||||| ||| ||||| ||| |||  || ||||    
T  6219310 ccctcaatagaattcttgatcctttggggaatcatttgatagagttcttttcgatttttatagcccatcaaagaaaatattaagatcaacagcccgaaat 6219211  T
Q  258 aaatccaagcaat 270  Q
     ||||||||||||    
T  6219210 caatccaagcaat 6219198  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 6326307 - 6326357
Alignment:
Q  316 aattcagccattgttcttcaaactcaacttttgatgagtacaacacattcttca 369  Q
    |||||||||||||||| | ||||||   ||||||||||||||||||||||||||    
T  6326307 aattcagccattgttcgttaaactc---ttttgatgagtacaacacattcttca 6326357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 6243046 - 6243006
Alignment:
Q  68 aaatgcaatcaattgctctatacaggaagcgattcaactcc 108  Q
    |||||||| ||||||||||| |||||||| |||||||||||    
T  6243046 aaatgcaaacaattgctctagacaggaagtgattcaactcc 6243006  T

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Target: scaffold2079 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 715 - 654
Alignment:
Q  311 ctccaaattcagccattgttcttcaaactcaacttttg---atgagtacaacacattcttca 369  Q
    |||| ||||| |||||||||||||||||||||||||||   |||||||||||||||||||||    
T  715 ctcctaattctgccattgttcttcaaactcaacttttgatgatgagtacaacacattcttca 654  T

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