View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7293_high_18 (Length: 251)
Name: NF7293_high_18
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 44224750 - 44224969
Alignment:
| Q |
16 |
ataactaatatgacaatatatactatttttgggttagaagactaatataaacccagcaatagagat-aaaagatcaaaaatatgtttaaaccttcattct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
44224750 |
ataactaatatgacaatatatactatttttgggttagaagactaatataaacttagcaatagagttgaaaagatcaaaaatatgtttaaaccttcattct |
44224849 |
T |
|
| Q |
115 |
aatannnnnnngtcggtnnnnnnnttacaaactttcataaactcataacaaaacacaataatactaacgaactaacaatactatttaaaaaatatttttc |
214 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44224850 |
aacatttttttgtcggtaaaaaagttacaaactttcataaactcataacaaaacacaataatactaacgaactaacaatactatttaaaaaatatttttc |
44224949 |
T |
|
| Q |
215 |
tcaacgtcagatctcgaact |
234 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44224950 |
tcaacgtcagatctcgaact |
44224969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University