View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_high_23 (Length: 238)

Name: NF7293_high_23
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_high_23
NF7293_high_23
[»] chr5 (2 HSPs)
chr5 (96-238)||(17154846-17154988)
chr5 (4-67)||(17154786-17154849)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 17154846 - 17154988
Alignment:
Q  96 ttagggtactttgatctttttagacgtggaaaaacannnnnnnnaagtgtaaataacaattttcaaacttgtttgatgaatgaacccaataaggcccaat 195  Q
    |||||||| |||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17154846 ttagggtattttgatctttttagacgtgggaaaacatttttttgaagtgtaaataacaattttcaaacttgtttgatgaaggaacccaataaggcccaat 17154945  T
Q  196 acttgctcgtgaaatattattttcgtaatcaatataaaaggtc 238  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  17154946 acttgctcgtgaaatattattttcctaatcaatataaaaggtc 17154988  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 17154786 - 17154849
Alignment:
Q  4 attgctctcccacaccttcaataccccaacgacaattaattgtccttatctccttaacatttag 67  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  17154786 attgctctcccacaccttcaataccccaacaacagttaactgtccttatctccttaacatttag 17154849  T

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