View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_high_26 (Length: 229)
Name: NF7293_high_26
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_high_26 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 26495059 - 26495287
Alignment:
| Q |
6 |
atatccctctatggataaattaaaaatgagtcataaactatgaacagggacacatcggtgtcagacacaacacgtgtctg-----atacggagacacgcc |
100 |
Q |
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| T |
26495059 |
atatccctgtatggataaattaaaaatgacgcataaactatgaacagggacacgtaggtgtcagacacaacacgtgtctgatctgatacggagacacgcc |
26495158 |
T |
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| Q |
101 |
taatcttgtctcctaatcctagaagtgtctgtgcctcgtaattcataaatcataatttttcaaacacaaggtcaatagaatcaaacacgattatttgatt |
200 |
Q |
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| T |
26495159 |
taatcctgtctcctaatcctagaagtgtccgtgcctcgtagctcataaatcataatttttcaaacacaaggtcaatagactcaaacaaaattatttgatt |
26495258 |
T |
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| Q |
201 |
attataataatgaaaactatgattattga |
229 |
Q |
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| T |
26495259 |
attataataataaaaactatgattattga |
26495287 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 3951544 - 3951499
Alignment:
| Q |
60 |
tcggtgtcagacacaacacgtgtctgatacggagacacgcctaatc |
105 |
Q |
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| T |
3951544 |
tcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatc |
3951499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 28524490 - 28524534
Alignment:
| Q |
62 |
ggtgtcagacacaacacgtgtctgatacggagacacgcctaatct |
106 |
Q |
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| T |
28524490 |
ggtgtcggacacaacacgtgtctgacacagaaacacgcctaatct |
28524534 |
T |
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