View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_high_3 (Length: 625)

Name: NF7293_high_3
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_high_3
NF7293_high_3
[»] chr5 (10 HSPs)
chr5 (13-194)||(38276416-38276598)
chr5 (247-362)||(38276232-38276347)
chr5 (482-611)||(38276105-38276233)
chr5 (13-76)||(38277743-38277806)
chr5 (532-600)||(38273151-38273219)
chr5 (253-315)||(38274618-38274680)
chr5 (247-305)||(38262939-38262997)
chr5 (191-244)||(38273278-38273331)
chr5 (384-426)||(38271381-38271423)
chr5 (247-283)||(38273216-38273252)
[»] chr8 (1 HSPs)
chr8 (13-96)||(26572301-26572384)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 1e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 38276598 - 38276416
Alignment:
Q  13 aatatcaacactactttggaaatatggtgaaacacatgatagcaacctttcatttcccatgaagctttcttacctatgcattcctcagagccctaactat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38276598 aatatcaacactactttggaaatatggtgaaacacatgatagcaacctttcatttcccatgaagctttctgacctatgcattcctcagagccctaactat 38276499  T
Q  113 gaatgatgttattgcttatagaacatagcaaagatgaatatggaaaac-aatacaaaaaacatgtctcaatagtggaagaatt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  38276498 gaatgatgttattgcttatagaacatagcaaagatgaatatggaaaacaaatacaaaaaacatgtctcaaaggtggaagaatt 38276416  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 38276347 - 38276232
Alignment:
Q  247 tactttatttcagttgatttggaagttaatcatcttttcaagaactagactccctaatatcacactgcacagactcttgccacacctgcaaggacacttc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38276347 tactttatttcagttgatttggaagttaatcatcttttcaagaactagactccctaatatcactctgcacagactcttgccacacctgcaaggacacttc 38276248  T
Q  347 catgacttctttcatc 362  Q
    ||||||||||||||||    
T  38276247 catgacttctttcatc 38276232  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 482 - 611
Target Start/End: Complemental strand, 38276233 - 38276105
Alignment:
Q  482 tccaaaacttgacgcctattagcttaagagtttttgaaggataatagtgactttgaaaggaacttatcagtgagtttgagcttcaagtcttgttgatctg 581  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38276233 tccaaaacttgacgcgtattagctta-gagtttttgaaggataatagtgactttgaaaggaacttatcggtgagtttgagcttcaagtcttgttgatctg 38276135  T
Q  582 actcaatgaatcacgcactggtcttgttga 611  Q
    |||||||||||| | |||||||||||||||    
T  38276134 actcaatgaatcgcacactggtcttgttga 38276105  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 38277806 - 38277743
Alignment:
Q  13 aatatcaacactactttggaaatatggtgaaacacatgatagcaacctttcatttcccatgaag 76  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38277806 aatatcaacactagtttggaaatatggtgaaacacatgatggcaacctttcatttcccatgaag 38277743  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 532 - 600
Target Start/End: Complemental strand, 38273219 - 38273151
Alignment:
Q  532 ctttgaaaggaacttatcagtgagtttgagcttcaagtcttgttgatctgactcaatgaatcacgcact 600  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  38273219 ctttgaaaggaacttatctgcgagtttgagcttcaagtcttgttgatctgactcaattaatcacacact 38273151  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 38274680 - 38274618
Alignment:
Q  253 atttcagttgatttggaagttaatcatcttttcaagaactagactccctaatatcacactgca 315  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||||||||| || |||||    
T  38274680 atttcagttgttttggaagttaatcaccttttcaagaactagattccctaatattactctgca 38274618  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 38262997 - 38262939
Alignment:
Q  247 tactttatttcagttgatttggaagttaatcatcttttcaagaactagactccctaata 305  Q
    ||||| |||||||||  ||||||||||||||  ||| ||||||||||||||||||||||    
T  38262997 tacttaatttcagtttctttggaagttaatcgccttatcaagaactagactccctaata 38262939  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 38273331 - 38273278
Alignment:
Q  191 aatttctctacacagcacatcatctattccataactgagtcatagtaactaaga 244  Q
    ||||||||||| |||||||| | ||||||| ||||||| |||||||||||||||    
T  38273331 aatttctctacgcagcacattaactattccttaactgaatcatagtaactaaga 38273278  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 38271423 - 38271381
Alignment:
Q  384 acaacggattcggtaaatatgacttcagaaaatcttcatcgtg 426  Q
    |||| |||||||||||||||||||| |||||||||||| ||||    
T  38271423 acaatggattcggtaaatatgacttgagaaaatcttcaacgtg 38271381  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 38273252 - 38273216
Alignment:
Q  247 tactttatttcagttgatttggaagttaatcatcttt 283  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  38273252 tacttaatttcagttgttttggaagttaatcatcttt 38273216  T

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Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 26572384 - 26572301
Alignment:
Q  13 aatatcaacactactttggaaatatggtgaaacacatgatagcaacctttcatttcccatgaagctttcttacctatgcattcc 96  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||   |||||||||||||    
T  26572384 aatatcaacattactttggaaatataatgaaacacatgatagcaatctttcatttcccatgaagctttgagacctatgcattcc 26572301  T

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