View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_high_6 (Length: 546)
Name: NF7293_high_6
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 15075837 - 15076230
Alignment:
| Q |
19 |
catcaccatggggagttcatagggtgctctcaaaattcaggacaatgcctgaattagagaagaacaagaaaatgataaaccaagagacattcatgtagca |
118 |
Q |
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| T |
15075837 |
catcaccatgaggagttcatagggtgctctcaaaattcaggactatgcatgaatcgaagaagaccaagaaaattatgaaccaggagacattcatggtgca |
15075936 |
T |
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| Q |
119 |
aagggttttgaaggctaaggagaaagtgaaaaaactaaggaagggcaacagagagaatgagattacaatcatcatgtttcaatgtcttaatgctgaagaa |
218 |
Q |
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| T |
15075937 |
aagggttttgaaggtaaaggagaaagtgaaaaaactaaggaagggcaacagggaaaatgagattacaatcatcatgtttcaatgtattaatgctgaagaa |
15076036 |
T |
|
| Q |
219 |
attgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaaccgatagaagattggaaaaagtggata |
318 |
Q |
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| T |
15076037 |
attgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaactgatagaagattggaaaaagtggata |
15076136 |
T |
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| Q |
319 |
ataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaaagacaccaccaccaacaatttatagattaaatattctatg |
412 |
Q |
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| T |
15076137 |
ataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaatgacaccaccaccaacaatttatagattaaatattctatg |
15076230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 15073040 - 15073437
Alignment:
| Q |
19 |
catcaccatggggagttcatagggtgctctcaaaattcaggacaatgcctgaattagagaagaacaagaaaatgataaaccaagagacattcatgtagca |
118 |
Q |
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| T |
15073040 |
catcatcatggggagttcatagggtgctctcaaaattcaggactatgcctgaattagagaagaacaagaaaatgatgaaccaagagacattcatgaggca |
15073139 |
T |
|
| Q |
119 |
aagggttttgaaggctaaggagaaagtgaaaaaactaaggaagggcaacagagagaatgagattacaatcatcatgtttcaatgtcttaa----tgctga |
214 |
Q |
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| T |
15073140 |
acgggttttgaaggctaaggagaaagtggaaaaactaaggaagggaaacagggagcaagagatgacaatgatcatgtttcaatgtcttaattaatgctga |
15073239 |
T |
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| Q |
215 |
agaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaaccgatagaagattggaaaaagtg |
314 |
Q |
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| T |
15073240 |
aaaaattatgcacgatgatacgtcaatgattgatttgaatgttcttgcttggttgattgatcaaaatttgaaggatattcatagaagattggaagaagtg |
15073339 |
T |
|
| Q |
315 |
gataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaaagacaccaccaccaacaatttatagattaaatattctatg |
412 |
Q |
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| T |
15073340 |
gataataatggtcatccaagtcaagtcatgactactcaaagttaagttcaacttcaaatgacgccaccaccaacaatttatagattaaatattctatg |
15073437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 351
Target Start/End: Original strand, 13308514 - 13308670
Alignment:
| Q |
192 |
atgtttcaatgtcttaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaa |
291 |
Q |
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||||||||||| || ||||| | |||||||| |||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| | |
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| T |
13308514 |
atgtttcaatgcctgaatgcagggaaaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggaca |
13308613 |
T |
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| Q |
292 |
ccgatagaagattggaaaaagtggataataatggtcatataaatcaagtcatgactactc |
351 |
Q |
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| T |
13308614 |
ttggaagaaggttggaagcagtggacaataatggtca---aaatcaaatcatgactactc |
13308670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 13308405 - 13308473
Alignment:
| Q |
83 |
caagaaaatgataaaccaagagacattcatgtagcaaagggttttgaaggctaaggagaaagtgaaaaa |
151 |
Q |
| |
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| T |
13308405 |
caagaaaatgatgaatcaagagactttcatgaaccaaagggtgatgaaggctaaagagcaggtgaaaaa |
13308473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 19004615 - 19004532
Alignment:
| Q |
48 |
tcaaaattcaggacaatgcctgaattagagaagaacaagaaaatgataaaccaagagacattcatgtagcaaagggttttgaag |
131 |
Q |
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|||||||||||||| ||| || |||| |||||||| ||||||||||| || |||||||| |||| | | ||||||||||||||| |
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| T |
19004615 |
tcaaaattcaggactatgactaaattggagaagaaaaagaaaatgatgaatcaagagactttcaagaaacaaagggttttgaag |
19004532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 18950291 - 18950208
Alignment:
| Q |
48 |
tcaaaattcaggacaatgcctgaattagagaagaacaagaaaatgataaaccaagagacattcatgtagcaaagggttttgaag |
131 |
Q |
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||||||||||||| ||| | |||| |||||||| ||||||||||| || |||||||| |||| | | ||||||||||||||| |
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| T |
18950291 |
tcaaaattcaggattatgattaaattggagaagaaaaagaaaatgatgaatcaagagactttcaagaaacaaagggttttgaag |
18950208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 11096173 - 11096217
Alignment:
| Q |
245 |
tgatttgaatgatcttgcttggttgattgaccaaaatttgaagga |
289 |
Q |
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| T |
11096173 |
tgatttgagtgatctttcttggttgattgaccataatttgaagga |
11096217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 11106879 - 11106912
Alignment:
| Q |
256 |
atcttgcttggttgattgaccaaaatttgaagga |
289 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
11106879 |
atcttgcttggttgattgaccacaatttgaagga |
11106912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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