View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_high_7 (Length: 478)

Name: NF7293_high_7
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_high_7
NF7293_high_7
[»] scaffold0427 (2 HSPs)
scaffold0427 (16-389)||(4855-5229)
scaffold0427 (393-462)||(5516-5585)
[»] chr3 (4 HSPs)
chr3 (20-218)||(3398671-3398870)
chr3 (237-462)||(53727058-53727287)
chr3 (237-321)||(53731611-53731695)
chr3 (432-460)||(53731542-53731570)
[»] chr5 (4 HSPs)
chr5 (42-172)||(24318037-24318167)
chr5 (42-163)||(24187928-24188049)
chr5 (62-166)||(20550224-20550328)
chr5 (237-280)||(34350511-34350554)
[»] chr4 (1 HSPs)
chr4 (237-462)||(23544238-23544467)
[»] chr8 (2 HSPs)
chr8 (40-175)||(24537288-24537423)
chr8 (70-173)||(26827267-26827370)
[»] chr6 (2 HSPs)
chr6 (240-391)||(19229964-19230118)
chr6 (21-178)||(22567054-22567211)
[»] scaffold0008 (1 HSPs)
scaffold0008 (42-175)||(233381-233514)
[»] chr1 (1 HSPs)
chr1 (237-280)||(49873609-49873652)


Alignment Details
Target: scaffold0427 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 4855 - 5229
Alignment:
Q  16 attgggagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  4855 attgggagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgggatacctcgaattttagcaaga 4954  T
Q  116 agtagatataaagcgacaagagttgttgaagtcaacacaagctcgaaaagatgagcagatcaactc-atagaagtggttgaagataaaccttagacggaa 214  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4955 agtagatataaagcgataagagttgttgaagtcaacacaagctcgaaaagatgagcagatcaactcgatagaagtggttgaagataaaccttagacggaa 5054  T
Q  215 gatgaacaagaggacaatgaagtgttgtatttttatttaaaatatttcaaaagttaatgcaattaattagtacatttaacttgttttcaaccgttaagtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||||||||||||  |||| |||    
T  5055 gatgaacaagaggacaatgaagtgttgtatttttatttaaaatgtttcaaaagttaatgcaattaactaccacatttaacttgttttcaatagttacgtt 5154  T
Q  315 ttcattcccaacgtccaaaatttgttagctattattgtggcattatttttgcatgactgagtcaattttgttgct 389  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155 ttcattcccaacgtccaaaatttggttgctattattgtggcattatttttgcatgactgagtcaattttgttgct 5229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 5516 - 5585
Alignment:
Q  393 taaaatacatttctgacgtgaacaaaaacataaaaagaaaagctctattcttctttctcatacttgatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5516 taaaatacatttctgacgtgaacaaaaacataaaaagaaaagctctattcttctttctcatacttgatca 5585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 3398671 - 3398870
Alignment:
Q  20 ggagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagta 119  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||| ||| |||||||||  ||||||| | ||||||| ||||| |     
T  3398671 ggagcacttgatctccttattcaagaaggttaaggtgacgaattcctatgtggagaagatgggaaaagagtcaggataccttgcatttcagaaagaaatt 3398770  T
Q  120 gatataaagcgacaagagttgttgaagtcaacacaagctcgaaaagatgagcagatcaactca-tagaagtggttgaagataaaccttagacggaagatg 218  Q
     || |||||||| |||||||||||||||||| ||||| |    |||||||||| || ||| || ||||||||| |||||| |||||| ||||||||||||    
T  3398771 catctaaagcgataagagttgttgaagtcaaaacaagatatggaagatgagcatattaacgcagtagaagtggctgaagacaaacctcagacggaagatg 3398870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 237 - 462
Target Start/End: Complemental strand, 53727287 - 53727058
Alignment:
Q  237 tgttgtatttttatttaaaatatttcaaaagttaatgcaattaattagtacatttaacttgttttcaaccgttaagttttcattcccaa---cgtccaaa 333  Q
    |||||||| ||||||||   |||||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||  ||||||||  |||   ||| ||||    
T  53727287 tgttgtatatttatttattttatttcaaaagttaattcaattaactagcacatttaacttgtttacaacagttactttttcattttcaaaaacgtgcaaa 53727188  T
Q  334 atttgttagctattattgtggcattatttttgcatgactgagtcaattttgttgctatgtaaaatacatttctgacgtgaacaaaa--acataaaaagaa 431  Q
     ||||||||||||||||||||| ||||||||||| |||  ||||| |||||||||||| ||| ||    |||  ||||||||||||  ||||| |||       
T  53727187 -tttgttagctattattgtggctttatttttgcaagaccaagtcagttttgttgctatataatattacgttccaacgtgaacaaaaacacatagaaaatt 53727089  T
Q  432 aagctctattcttctttctcatacttgatca 462  Q
    |||||||||||||||||||||||||||||||    
T  53727088 aagctctattcttctttctcatacttgatca 53727058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 53731695 - 53731611
Alignment:
Q  237 tgttgtatttttatttaaaatatttcaaaagttaatgcaattaattagtacatttaacttgttttcaaccgttaagttttcattc 321  Q
    |||||||| ||||||||   |||||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||  |||||||||    
T  53731695 tgttgtatatttatttattttatttcaaaagttaattcaattaactagcacatttaacttgtttacaacagttactttttcattc 53731611  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 460
Target Start/End: Complemental strand, 53731570 - 53731542
Alignment:
Q  432 aagctctattcttctttctcatacttgat 460  Q
    |||||||||||||||||||||||||||||    
T  53731570 aagctctattcttctttctcatacttgat 53731542  T

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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 24318037 - 24318167
Alignment:
Q  42 aagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagtagatataaagcgacaagagttgt 141  Q
    |||||||||||||| || | || |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24318037 aagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgggatacctcgaatttcagcaagaagtagatctaaagcgacaagagttgt 24318136  T
Q  142 tgaagtcaacacaagctcgaaaagatgagca 172  Q
    |||| |||| ||||||| |||| || |||||    
T  24318137 tgaaatcaaaacaagctggaaaggacgagca 24318167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 24187928 - 24188049
Alignment:
Q  42 aagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagtagatataaagcgacaagagttgt 141  Q
    |||||||| ||||| || | |||||||||| ||||| ||||||||||| || ||||||| |||||||||||||| | ||   |  |||||||||||||||    
T  24187928 aagaaggtgaaggttactagttcttttgtgaagaagttggaaaaagagccgggataccttgaatttcagcaagaggcaggactgcagcgacaagagttgt 24188027  T
Q  142 tgaagtcaacacaagctcgaaa 163  Q
    ||||||||| ||||||| ||||    
T  24188028 tgaagtcaaaacaagctggaaa 24188049  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 20550224 - 20550328
Alignment:
Q  62 ttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagtagatataaagcgacaagagttgttgaagtcaacacaagctcga 161  Q
    ||||||| ||||||||||||| |||||| |  ||||||| ||||| ||||||||||  ||  | ||||||||| ||||||| ||||||| ||||||| ||    
T  20550224 ttcttttatggagaagctggagaaagagccaggataccttgaattccagcaagaagcggagctgaagcgacaatagttgtttaagtcaaaacaagctgga 20550323  T
Q  162 aaaga 166  Q
    |||||    
T  20550324 aaaga 20550328  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 34350511 - 34350554
Alignment:
Q  237 tgttgtatttttatttaaaatatttcaaaagttaatgcaattaa 280  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||    
T  34350511 tgttgtacttttatataatatatttcaaaagttaatgcaattaa 34350554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 462
Target Start/End: Original strand, 23544238 - 23544467
Alignment:
Q  237 tgttgtatttttatttaaaatatttcaaaagttaatgcaattaattagtacatttaacttgttttcaaccgttaagttttcattccc---aacgtccaaa 333  Q
    |||||||| ||||||||   |||||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||  ||||||||  |   ||||| | ||    
T  23544238 tgttgtatatttatttattttatttcaaaagttaattcaattaactagcacatttaacttgtttacaacagttactttttcattatcaaaaacgtgc-aa 23544336  T
Q  334 atttgttagctattattgtggcattatttttgcatgactgagtcaattttgttgctatgtaaaatacatttctgacgtgaacaaaa--acataaaaagaa 431  Q
    |||||||||||||||||||||| ||||||||||| |||  |||||  ||||||||||| ||| ||    |||  ||||||||||||  ||||| |||       
T  23544337 atttgttagctattattgtggctttatttttgcaagaccaagtcagctttgttgctatataatattacgttccaacgtgaacaaaaacacatagaaaatt 23544436  T
Q  432 aagctctattcttctttctcatacttgatca 462  Q
    |||||||||||||||||||||||||||||||    
T  23544437 aagctctattcttctttctcatacttgatca 23544467  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 24537423 - 24537288
Alignment:
Q  40 tcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagtagatataaagcgacaagagtt 139  Q
    |||||||||| ||||||||  ||||||||||||||||| |||| |||||| |  | ||||| ||||||||||||||||||||| ||||||||||||||||    
T  24537423 tcaagaaggtaaaggtgacttcttcttttgtggagaagttggagaaagagccagggtaccttgaatttcagcaagaagtagatttaaagcgacaagagtt 24537324  T
Q  140 gttgaagtcaacacaagctcgaaaagatgagcagat 175  Q
    |  ||||||||  |||||| ||||||| ||||||||    
T  24537323 gcggaagtcaaaccaagctggaaaagaagagcagat 24537288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 26827267 - 26827370
Alignment:
Q  70 tggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagtagatataaagcgacaagagttgttgaagtcaacacaagctcgaaaagatga 169  Q
    ||||||||||||| |||||| |  | ||||  ||||| ||||||||||| ||  | ||||||||||||||| || |||||| ||||||| ||||||| ||    
T  26827267 tggagaagctggagaaagagccagggtaccatgaattccagcaagaagtggagctgaagcgacaagagttgatgcagtcaaaacaagctggaaaagacga 26827366  T
Q  170 gcag 173  Q
    ||||    
T  26827367 gcag 26827370  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 391
Target Start/End: Complemental strand, 19230118 - 19229964
Alignment:
Q  240 tgtatttttatttaaaatatttcaaaagttaatgcaattaattagtacatttaactt----gttttcaaccgttaagttttcattcccaa-cgtccaaaa 334  Q
    ||||||||||||||   ||||||||||||||||||||||||  || |||||||||||    |||| |||| ||||  ||||||||||||| ||| ||||     
T  19230118 tgtatttttatttattttatttcaaaagttaatgcaattaacgagcacatttaacttaattgtttacaacagttac-ttttcattcccaaacgtgcaaa- 19230021  T
Q  335 tttgttagctattattgtggcattatttttgcatgactgagtcaattttgttgctat 391  Q
    ||||||||||||||||||||| ||||||||||| |||  ||||||||||||||||||    
T  19230020 tttgttagctattattgtggctttatttttgcaagacaaagtcaattttgttgctat 19229964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 22567054 - 22567211
Alignment:
Q  21 gagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagtag 120  Q
    |||||||||||||| | |||||||||||| | |||||| || || ||||||||||| || || || ||  | ||||||||||| |||||| | |||||||    
T  22567054 gagcacttgatctcattattcaagaaggtgacggtgacaacatcatttgtggagaaactagagaaggaaccaagatacctcgagtttcagaaggaagtag 22567153  T
Q  121 atataaagcgacaagagttgttgaagtcaacacaagctcgaaaagatgagcagatcaa 178  Q
    || | ||||  || ||| ||  ||| |||| || | || |||||||||||||||||||    
T  22567154 atctcaagcagcaggagctgcagaaatcaaaaccaactggaaaagatgagcagatcaa 22567211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 175
Target Start/End: Complemental strand, 233514 - 233381
Alignment:
Q  42 aagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgagatacctcgaatttcagcaagaagtagatataaagcgacaagagttgt 141  Q
    |||||||| ||||| || | ||||||||||||||||||||  |||||| |  | ||||||||||| || || ||||||||  | |||||||| ||||||     
T  233514 aagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtacctcgaattccatcatgaagtagagctgaagcgacaggagttgc 233415  T
Q  142 tgaagtcaacacaagctcgaaaagatgagcagat 175  Q
    | ||||||| ||| ||| |||| |||||||||||    
T  233414 taaagtcaaaacaggctggaaaggatgagcagat 233381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 49873652 - 49873609
Alignment:
Q  237 tgttgtatttttatttaaaatatttcaaaagttaatgcaattaa 280  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  49873652 tgttgtatttttatataatatatttcaaaagttaatgcaattaa 49873609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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