View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_high_9 (Length: 447)

Name: NF7293_high_9
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_high_9
NF7293_high_9
[»] chr1 (8 HSPs)
chr1 (16-447)||(7487462-7487893)
chr1 (20-432)||(7873472-7873887)
chr1 (16-356)||(7494928-7495277)
chr1 (91-356)||(7474663-7474922)
chr1 (85-214)||(6944389-6944518)
chr1 (13-70)||(7497068-7497125)
chr1 (49-83)||(7483599-7483633)
chr1 (381-446)||(6944160-6944225)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 7487462 - 7487893
Alignment:
Q  16 atatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaatttagtataatcaacatcaatttgaaattg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7487462 atatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaatttagtataatcaacatcaatttgaaattg 7487561  T
Q  116 gtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccattcttccaaaggccacacatacgaaac 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7487562 gtaaagtgatttgccttgatagtcatacgatgtgagtggttctccaacctttcctccaaggatttgatcgccattcttccaaaggccacacatacgaaac 7487661  T
Q  216 attgtcacaagtgggccaatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttacaatgcacaa 315  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7487662 attgacacaagtgggccaatgttgcactttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttacaatgcacaa 7487761  T
Q  316 cataagcaagggaacctttgatctcggcaacaccatcccatgcaaggttgcgatagtcacatgagaaggttggccctctgagttggtgaaactggttgtc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7487762 cataagcaagggaacctttgatctcggcaacaccatcccatgcaaagttgcgatagtcacatgagaaggttggccctctgagttggtgaaactggttgtc 7487861  T
Q  416 gcggaagtcaaagcatagaatatttgcaacaa 447  Q
    ||||||||||||||||||||||||||||||||    
T  7487862 gcggaagtcaaagcatagaatatttgcaacaa 7487893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 7873887 - 7873472
Alignment:
Q  20 atcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaatttagtataatcaacatcaatttgaaattggtaa 119  Q
    ||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||| | | ||||||| | || || |||||||||||||||| ||    
T  7873887 atcctagtttggtgtcctacctatcttggttgacaagggggctatgcttggcacatactcttaatatttagtcttatgaaaatcaatttgaaattggcaa 7873788  T
Q  120 agtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccattcttccaaaggccacacatacgaaacattg 219  Q
    ||||| |||||||||| |||||| ||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||   ||||||| ||||||    
T  7873787 agtgagttgccttgatggtcatatgatttgagcggttctccaaactttcctccaaggagttcatcgccattcttccaaaggccgagcatacgagacattg 7873688  T
Q  220 tcacaagtgggcc---aatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttacaatgcacaac 316  Q
     |||| |||||||   ||||||| || ||||||||||||||||||||||||| ||||||||| || | || || |||| || ||||| |   ||||||||    
T  7873687 acacaggtgggccaataatgttgtactttttgtgccatccactttgatccattacccaaatgttcgaaacgacaggagaatcgaagtgatgctgcacaac 7873588  T
Q  317 ataagcaagggaacctttgatctcggcaacaccatcccatgcaaggttgcgatagtcacatgagaaggttggccctctgagttggtgaaactggttgtcg 416  Q
    ||||||||||||||| || |||||||||||| |||| | |  ||  ||||| |  |||  ||||||||||||||||||||||| |||||||||||||| |    
T  7873587 ataagcaagggaacccttaatctcggcaacatcatcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttgttg 7873488  T
Q  417 cggaagtcaaagcata 432  Q
    || |||||||||||||    
T  7873487 cgaaagtcaaagcata 7873472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 7494928 - 7495277
Alignment:
Q  16 atatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaa---------tttagtataatcaacatcaat 106  Q
    |||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||          || ||||| ||||||||||||    
T  7494928 atatatcctagtttggtgtcctagctatcttggtagacaaaggagctatgcttggcacatactcatgaatccaaaaatgttcagtatcatcaacatcaat 7495027  T
Q  107 ttgaaattggtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccattcttccaaaggccacac 206  Q
    |||||||||| ||||||| |||||||||| |||||| ||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||||| ||    
T  7495028 ttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaaggagttgattgctattcttccaaaggccaaac 7495127  T
Q  207 atacgaaacattgtcacaagtgggccaatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttac 306  Q
    || ||||||||||  | || ||||||||||||  || ||||   |||||||||||||||||| |||||||||  |||||| || |||||||||| || |     
T  7495128 atgcgaaacattgaaaaaactgggccaatgttatacatttttctccatccactttgatccattacccaaatgtgcaagacgacaggagcattgacgtgat 7495227  T
Q  307 aatgcacaacataagcaagggaacctttgatctcggcaacaccatcccat 356  Q
      ||||||||||||||||||||||| |||||||||||||||  |||||||    
T  7495228 tctgcacaacataagcaagggaacccttgatctcggcaacattatcccat 7495277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 91 - 356
Target Start/End: Original strand, 7474663 - 7474922
Alignment:
Q  91 tataatcaacatcaatttgaaattggtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccatt 190  Q
    |||||||||||||||||||||||||| ||||||| ||||||| || |||||| |||| ||| |  | |||| ||||||||||||||| |||||| |||||    
T  7474663 tataatcaacatcaatttgaaattggcaaagtgagttgccttcatggtcatatgatgcgagggactttccatcctttcctccaaggagttgatcaccatt 7474762  T
Q  191 cttccaaaggccacacatacgaaacattgtcacaagtgggccaatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacg 290  Q
    ||||||||| || | |||||||||||||| ||||| || || ||||||| || |||| | ||||||||| |||||||| ||||||||  ||      |||    
T  7474763 cttccaaagaccgcccatacgaaacattggcacaattgagctaatgttgtactttttctcccatccactatgatccattacccaaattttc------acg 7474856  T
Q  291 ggagcattgaagttacaatgcacaacataagcaagggaacctttgatctcggcaacaccatcccat 356  Q
      | || | || | ||||||||||||||||| |||||| |||||||||||||||||  ||||||||    
T  7474857 caatcagtaaaatgacaatgcacaacataagaaagggagcctttgatctcggcaacgtcatcccat 7474922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 6944518 - 6944389
Alignment:
Q  85 atttagtataatcaacatcaatttgaaattggtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatc 184  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||| ||||| |||||||| || |||||||||||| ||||||    
T  6944518 atttagcataatcaacatcaatttgaaattggcaaagtgagttgccttgatggtcatatgatctgagcagttctccagcccttcctccaaggagttgatc 6944419  T
Q  185 gccattcttccaaaggccacacatacgaaa 214  Q
     || ||||||||||| || ||||| |||||    
T  6944418 cccgttcttccaaagaccgcacattcgaaa 6944389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 7497125 - 7497068
Alignment:
Q  13 aatatatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttgg 70  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  7497125 aatatatatcctagtgtggtgtcctagctagctagattgacaagggagctatgtttgg 7497068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 7483599 - 7483633
Alignment:
Q  49 ttgacaagggagctatgcttggcacatactcatga 83  Q
    |||||||||||||||||||||||||||||||||||    
T  7483599 ttgacaagggagctatgcttggcacatactcatga 7483633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 6944225 - 6944160
Alignment:
Q  381 aaggttggccctctgagttggtgaaactggttgtcgcggaagtcaaagcatagaatatttgcaaca 446  Q
    |||||||||||||||||||||||||| || | || ||| |||| ||||||||  ||||||||||||    
T  6944225 aaggttggccctctgagttggtgaaattgatcgttgcgaaagttaaagcataagatatttgcaaca 6944160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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