View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_low_1 (Length: 658)

Name: NF7293_low_1
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_low_1
NF7293_low_1
[»] chr2 (10 HSPs)
chr2 (68-393)||(29054403-29054741)
chr2 (397-641)||(29054776-29055020)
chr2 (135-349)||(34635308-34635522)
chr2 (479-641)||(34636001-34636166)
chr2 (198-341)||(29312352-29312495)
chr2 (482-613)||(29312062-29312198)
chr2 (1-49)||(29054357-29054405)
chr2 (391-487)||(34635611-34635705)
chr2 (354-393)||(34635541-34635580)
chr2 (354-393)||(29312287-29312326)
[»] chr7 (5 HSPs)
chr7 (391-641)||(13792502-13792755)
chr7 (410-641)||(28743487-28743721)
chr7 (135-393)||(28743771-28744043)
chr7 (191-393)||(13792255-13792471)
chr7 (148-203)||(13792094-13792149)
[»] scaffold0769 (4 HSPs)
scaffold0769 (135-349)||(4392-4606)
scaffold0769 (479-641)||(3748-3913)
scaffold0769 (391-487)||(4209-4303)
scaffold0769 (354-393)||(4334-4373)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 68 - 393
Target Start/End: Original strand, 29054403 - 29054741
Alignment:
Q  68 tagacagaatcgccacgagtcgagcgagtgggttcatacccacgagagagtcacgaacaatctgatgaaatttgagttagacacgctcaaatagggtcat 167  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29054403 tagacagaatcgccacgagtcgagcgagtgggttcatacgcacgagagagtcatgaacaatctgatgaaatttgagttagacacgctcaaatagggtcat 29054502  T
Q  168 tgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctcta 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054503 tgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctcta 29054602  T
Q  268 acagcaataatcacattaacaactttagacatatacaaaatggcattgtgacaatcaccacatattctcaaatttttaaaaaac-------cg------c 354  Q
    |||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |       ||      |    
T  29054603 acagtaataatcacacaaacaactttagacatatactaaatggcattgtgacaatcaccacatattctcaaatttttaaaaaccgcattgtcgactgtcc 29054702  T
Q  355 attcaaattaagtatcccaaatgcaacagcaagcttctc 393  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29054703 attcaaattaagtatcccaaatgcaacagcaagcttctc 29054741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 397 - 641
Target Start/End: Original strand, 29054776 - 29055020
Alignment:
Q  397 attaatatcaccaagaacataatcagtgtcagctttatatccggccacttttactttctcaaccaactcatccaaaaagtgatagattttatcactctcc 496  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054776 attaatatcaccaagaacataatcagtgtcagccttatatccggccacttttactttctcaaccaactcatccaaaaagtgatagattttatcactctcc 29054875  T
Q  497 atattacttttgtctccaacaaaagtgtgaactctattacctacatgaagccaactacatcctggagtttttgtaattcctctctctttcatcagcattc 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29054876 atattacttttgtctccaacaaaagtgtgaactctattacctacatgaagccaactacatcctggagtttttgtaattcctctctctttcatcatcattc 29054975  T
Q  597 tgatttttgaagcttcactccataatttggcagtaacaagaatgt 641  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29054976 tgatttttgaagcttcactccataatttggcagtaacaagaatgt 29055020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 135 - 349
Target Start/End: Original strand, 34635308 - 34635522
Alignment:
Q  135 aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca 234  Q
    ||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| || ||||| |||||| |||||    
T  34635308 aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaatttcca 34635407  T
Q  235 tttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagacatatacaaaatggcattgtgacaatcaccacatattc 334  Q
    ||||||||||||| |||||| ||||||||||| ||| |||| ||||||| |||||| |||| |||||||  |||||||||||||||||||||||||||||    
T  34635408 tttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattc 34635507  T
Q  335 tcaaatttttaaaaa 349  Q
    ||||||| |||||||    
T  34635508 tcaaattcttaaaaa 34635522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 479 - 641
Target Start/End: Original strand, 34636001 - 34636166
Alignment:
Q  479 tagattttatcactctccatattacttttgtctcca---acaaaagtgtgaactctattacctacatgaagccaactacatcctggagtttttgtaattc 575  Q
    |||||||||||| |||||||||||||||||||||||   |||||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  34636001 tagattttatcattctccatattacttttgtctccagcaacaaagttgtgaactctatttcccacatgaagccaactacatcctggagtttttgtaattc 34636100  T
Q  576 ctctctctttcatcagcattctgatttttgaagcttcactccataatttggcagtaacaagaatgt 641  Q
    | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636101 cactctctttcataaacattctgatttttgaagcttcactccataatttggcagtaacaagaatgt 34636166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 198 - 341
Target Start/End: Complemental strand, 29312495 - 29312352
Alignment:
Q  198 aaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagac 297  Q
    ||||| ||||||||| || |||||||||||| || ||||||||||||||||||||||||||| ||| |||||| ||||||||||  ||||||| ||||||    
T  29312495 aaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagac 29312396  T
Q  298 atatacaaaatggcattgtgacaatcaccacatattctcaaatt 341  Q
    ||||||  ||||||||||||||||||||||||||||||||||||    
T  29312395 atatacttaatggcattgtgacaatcaccacatattctcaaatt 29312352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 482 - 613
Target Start/End: Complemental strand, 29312198 - 29312062
Alignment:
Q  482 attttatcactctccatattacttttgtctcca---acaaaagtgtgaactctattacctacatgaagccaac-tacatcc-tggagtttttgtaattcc 576  Q
    |||| ||||||||| ||||||||||||||||||   |||||||||||||||||||| || ||||||||||| | |||| ||   |||||||| |||||||    
T  29312198 atttcatcactctcaatattacttttgtctccagcaacaaaagtgtgaactctatttcccacatgaagccagcttacagccactgagtttttataattcc 29312099  T
Q  577 tctctctttcatcagcattctgatttttgaagcttca 613  Q
    ||||||||  ||||  ||| |||||||||||||||||    
T  29312098 tctctcttgaatcaatattttgatttttgaagcttca 29312062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29054357 - 29054405
Alignment:
Q  1 tggaacaaattgagagaataaaatacatgatctaagagacagttcgtag 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29054357 tggaacaaattgagagaataaaatacatgatctaagagacagttcgtag 29054405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 487
Target Start/End: Original strand, 34635611 - 34635705
Alignment:
Q  391 ctcttgattaatatcaccaagaacataatcagtgtcagctttatatccggccacttttactttctcaaccaactcatccaaaaagtgatagatttta 487  Q
    |||||||| |||||||   ||||||| ||||||||| |||| |||||| ||| |||||| |||||||||||||||||| ||||||| ||||||||||    
T  34635611 ctcttgatcaatatcatgcagaacattatcagtgtc-gctt-atatccagccgcttttattttctcaaccaactcatctaaaaagttatagatttta 34635705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 393
Target Start/End: Original strand, 34635541 - 34635580
Alignment:
Q  354 cattcaaattaagtatcccaaatgcaacagcaagcttctc 393  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  34635541 cattcaaattaagtatcccaaatgcaacggcaagcttctc 34635580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 393
Target Start/End: Complemental strand, 29312326 - 29312287
Alignment:
Q  354 cattcaaattaagtatcccaaatgcaacagcaagcttctc 393  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  29312326 cattcaaattaagtatcccgaatgcaaccgcaagcttctc 29312287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 4e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 391 - 641
Target Start/End: Original strand, 13792502 - 13792755
Alignment:
Q  391 ctcttgattaatatcaccaagaacataatcagtgtcagctttatatccggccacttttactttctcaaccaactcatccaaaaagtgatagattttatca 490  Q
    |||||||| |||||||   |||||||||||||||||||  |||||||| ||| |||||| |||  ||| ||||||||||||||||| |||||||||||||    
T  13792502 ctcttgatcaatatcatgcagaacataatcagtgtcaggcttatatccagccgcttttatttttgcaaacaactcatccaaaaagttatagattttatca 13792601  T
Q  491 ctctccatattacttttgtctcca---acaaaagtgtgaactctattacctacatgaagccaactacatcctggagtttttgtaattcctctctctttca 587  Q
    ||||||||||||||||||||||||   |||||||||||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  13792602 ctctccatattacttttgtctccagcaacaaaagtgtgaactctatttcccacatgaaaccaactacaacctggagtttttgtaattcctctctctttca 13792701  T
Q  588 tcagcattctgatttttgaagcttcactccataatttggcagtaacaagaatgt 641  Q
    ||| | ||||||||||||||||||||||||| ||||| || |||||||||||||    
T  13792702 tcaactttctgatttttgaagcttcactccacaatttagctgtaacaagaatgt 13792755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 410 - 641
Target Start/End: Complemental strand, 28743721 - 28743487
Alignment:
Q  410 agaacataatcagtgtcagctttatatccggccacttttactttctcaaccaactcatccaaaaagtgatagattttatcactctccatattacttttgt 509  Q
    |||||||||||||||||||  |||||||| |||| ||| | ||||||||||||||| |||||||||| ||||||||||||||| || |||||||||||||    
T  28743721 agaacataatcagtgtcaggcttatatccagccattttcattttctcaaccaactcgtccaaaaagttatagattttatcactttcaatattacttttgt 28743622  T
Q  510 ctccaacaa---aagtgtgaactctattacctacatgaagccaactacatcctggagtttttgtaattcctctctctttcatcagcattctgatttttga 606  Q
    |||||||||   ||||||||||| |||| || || |||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||| || |||    
T  28743621 ctccaacaacaaaagtgtgaactttatttcccacttgaagccaactacatcctggtgtttttgtaattcctcgctctttcatcaatattctgacttgtga 28743522  T
Q  607 agcttcactccataatttggcagtaacaagaatgt 641  Q
    |||||||||||| | ||||||||||||||||||||    
T  28743521 agcttcactccacattttggcagtaacaagaatgt 28743487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 135 - 393
Target Start/End: Complemental strand, 28744043 - 28743771
Alignment:
Q  135 aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca 234  Q
    ||||||||||||||||  |||| ||||| | || || ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  28744043 aaatttgagttagacaaactcagataggattatcgtcaccacttaatcccaataatctgattcaaataatcaccataagtctttacaagaacaatttcca 28743944  T
Q  235 tttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagacatatacaaaatggcattgtgacaatcaccacatattc 334  Q
    ||||||||||||| |||||||||||||||||| ||| |||| || |||   ||||| ||||||||||||  ||||||||||||||||||||| |||||||    
T  28743943 tttttgaagtgatgaaacctcaaggagtctctgacaacaattataacaccgacaaccttagacatatacttaatggcattgtgacaatcaccgcatattc 28743844  T
Q  335 tcaaatttttaaaaaaccg--------------cattcaaattaagtatcccaaatgcaacagcaagcttctc 393  Q
    ||||||| ||||||| |||              |||||||||||||||||||||| |||||||||||||||||    
T  28743843 tcaaattcttaaaaacccgtattgtcgactgtccattcaaattaagtatcccaaaggcaacagcaagcttctc 28743771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 191 - 393
Target Start/End: Original strand, 13792255 - 13792471
Alignment:
Q  191 ctgagtcaaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaac 290  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||  ||||  |||||  ||||||    
T  13792255 ctgagtcaaataatcaccaaaaatctttacaagaacaatttccatttttgaagtgatgaaacctcaaggagtctctgacgacaatcgtcacaccaacaac 13792354  T
Q  291 tttagacatatacaaaatggcattgtgacaatcaccacatattctcaaatttttaaaaaaccg--------------cattcaaattaagtatcccaaat 376  Q
     || |||||||||  ||||||||| |||||||||||||||||||||||||| ||||||| |||              |||||||||||||||||||||||    
T  13792355 attggacatatacttaatggcattatgacaatcaccacatattctcaaattcttaaaaacccgtatcgtcgactgtccattcaaattaagtatcccaaat 13792454  T
Q  377 gcaacagcaagcttctc 393  Q
    |||||||||||||||||    
T  13792455 gcaacagcaagcttctc 13792471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 13792094 - 13792149
Alignment:
Q  148 acacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataa 203  Q
    |||| |||| ||||| ||||||||||  |||||||||||||||| |||||||||||    
T  13792094 acacactcagataggatcattgtgacgacttattcccaataatccgagtcaaataa 13792149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 123; Significance: 7e-63; HSPs: 4)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 135 - 349
Target Start/End: Complemental strand, 4606 - 4392
Alignment:
Q  135 aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca 234  Q
    ||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| || ||||| |||||| |||||    
T  4606 aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaatttcca 4507  T
Q  235 tttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagacatatacaaaatggcattgtgacaatcaccacatattc 334  Q
    ||||||||||||| |||||| ||||||||||| ||| |||| ||||||| |||||| |||| |||||||  |||||||||||||||||||||||||||||    
T  4506 tttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattc 4407  T
Q  335 tcaaatttttaaaaa 349  Q
    ||||||| |||||||    
T  4406 tcaaattcttaaaaa 4392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 479 - 641
Target Start/End: Complemental strand, 3913 - 3748
Alignment:
Q  479 tagattttatcactctccatattacttttgtctcca---acaaaagtgtgaactctattacctacatgaagccaactacatcctggagtttttgtaattc 575  Q
    |||||||||||| |||||||||||||||||||||||   |||||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  3913 tagattttatcattctccatattacttttgtctccagcaacaaagttgtgaactctatttcccacatgaagccaactacatcctggagtttttgtaattc 3814  T
Q  576 ctctctctttcatcagcattctgatttttgaagcttcactccataatttggcagtaacaagaatgt 641  Q
    | |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3813 cactctctttgataaacattctgatttttgaagcttcactccataatttggcagtaacaagaatgt 3748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 487
Target Start/End: Complemental strand, 4303 - 4209
Alignment:
Q  391 ctcttgattaatatcaccaagaacataatcagtgtcagctttatatccggccacttttactttctcaaccaactcatccaaaaagtgatagatttta 487  Q
    |||||||| |||||||   ||||||| ||||||||| |||| |||||| ||| |||||| |||||||||||||||||| ||||||| ||||||||||    
T  4303 ctcttgatcaatatcatgcagaacattatcagtgtc-gctt-atatccagccgcttttattttctcaaccaactcatctaaaaagttatagatttta 4209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 393
Target Start/End: Complemental strand, 4373 - 4334
Alignment:
Q  354 cattcaaattaagtatcccaaatgcaacagcaagcttctc 393  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  4373 cattcaaattaagtatcccaaatgcaacggcaagcttctc 4334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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