View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_low_13 (Length: 389)
Name: NF7293_low_13
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 15283559 - 15283933
Alignment:
| Q |
1 |
ttcaggcaattccatttcttcaactccactcacattataacatagctttaaaggtgaaaaactttcaactattgaataacccttaattttcttcatgaat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15283559 |
ttcaggcaattccatttcttcaattccactcacattataacatagctttaaaggtgcaaaactttcaactattgaataacccttaattttctccatgaat |
15283658 |
T |
|
| Q |
101 |
gcttcttgaataatctcataagctggtccagcaaaataagttaaagttgtaccggaatcgattattgtaccaccagaaccatcttcatttaaattccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15283659 |
gcttcttgaataatctcataagctggtccagcaaaataagttaaagttgtaccggaatcgattattgtaccaccagaaccatcttcatttaaattccatg |
15283758 |
T |
|
| Q |
201 |
tttcttttggtatttttagcacttcaccaccaactataatagattttatctcaacatagtaaaatgtgttctcttttccaccaacaaaagatgtgaaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15283759 |
tttcttttggtatttttagcacttcaccaccaactataatagattttatctcaacatagtaaaatgtgttctctaatccaccaacaaaagatgtgaaatt |
15283858 |
T |
|
| Q |
301 |
caaattagggttactaagaagctttttgttctcaccaaatagcaatttgctactaacacttgaattgctatttct |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15283859 |
caaattagggttactaagaagctttttgttctcaccaaatagcaatttgctactaacacttgaattgctatttct |
15283933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 39713545 - 39713205
Alignment:
| Q |
31 |
cacattataacatagctttaaaggtgaaaaactttcaactattgaataacccttaattttcttcatgaatgcttcttgaataatctcataagctggtcca |
130 |
Q |
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||||||||||||| |||| | ||||| ||||| ||||| | | |||||||||||| || |||||||| || |||| |||||||||||||| ||| || |
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| T |
39713545 |
cacattataacatggcttaagaggtggaaaaccctcaacaagttcataacccttaatctttttcatgaaagcctctttgataatctcataagcaggttca |
39713446 |
T |
|
| Q |
131 |
gcaaaataagttaaagttgtaccggaatcgattattgtaccaccagaaccatcttcatttaaattccatgtttcttttggtatttttagcacttcaccac |
230 |
Q |
| |
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||||||||||||||||| || || ||||| ||||||||||||||| ||| |||| |||| ||| ||||||| |||||| || | ||| |||||| |
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| T |
39713445 |
gcaaaataagttaaagtagttccagaatcaattattgtaccaccaccaccttcttttgacaaatgccaagtttcttctggtatcttcaacacctcaccat |
39713346 |
T |
|
| Q |
231 |
caactataatagattttatctcaacatagtaaaatgt---------gttctcttttccaccaacaaaagatgtgaaattcaaattagggttactaagaag |
321 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
39713345 |
caaccataatagattttatcccaacatagtaaaatgtatcaacagaattctcttcaccaccaacaaaagaagtgaaattcaaattagggtggctaagaag |
39713246 |
T |
|
| Q |
322 |
ctttttgttctcaccaaatagcaatttgctactaacacttg |
362 |
Q |
| |
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| ||| | ||| ||||||| ||| |||||||||||||||| |
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| T |
39713245 |
ttctttatcctcgccaaatatcaacttgctactaacacttg |
39713205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 33001103 - 33000950
Alignment:
| Q |
3 |
caggcaattccatttcttcaactccactcacattataacatagctttaaaggtgaaaaactttcaa----ctattgaataacccttaattttcttcatga |
98 |
Q |
| |
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|||| ||||||||||||| || ||||||||||||||||||| ||||| |||||| ||||||||||| | || ||| || |||||||||||||||| |
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| T |
33001103 |
caggtaattccatttcttaaattccactcacattataacatggctttgaaggtgcaaaactttcaaaactttcttaaattccctttaattttcttcatga |
33001004 |
T |
|
| Q |
99 |
atgcttcttgaataatctcataagctggtccagcaaaataagttaaagttgtac |
152 |
Q |
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||||||| | ||| ||||||||| ||| |||||||||||||||||| ||||| |
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| T |
33001003 |
atgcttccttaatgatctcataactaggttcagcaaaataagttaaagatgtac |
33000950 |
T |
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