View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_low_15 (Length: 381)

Name: NF7293_low_15
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_low_15
NF7293_low_15
[»] chr3 (6 HSPs)
chr3 (1-372)||(3175981-3176352)
chr3 (5-81)||(3175799-3175875)
chr3 (2-80)||(3175613-3175691)
chr3 (14-108)||(3175904-3175998)
chr3 (32-108)||(3175736-3175812)
chr3 (60-108)||(3175581-3175629)
[»] chr1 (4 HSPs)
chr1 (17-358)||(24541195-24541537)
chr1 (2-81)||(24540991-24541070)
chr1 (34-108)||(24540933-24541007)
chr1 (32-108)||(24541114-24541190)
[»] chr5 (4 HSPs)
chr5 (17-348)||(20963741-20964058)
chr5 (5-81)||(20964186-20964262)
chr5 (14-90)||(20964081-20964157)
chr5 (34-108)||(20964249-20964323)
[»] chr2 (5 HSPs)
chr2 (101-364)||(41525197-41525460)
chr2 (1-81)||(41524578-41524658)
chr2 (1-81)||(41524922-41525002)
chr2 (32-110)||(41524863-41524941)
chr2 (23-81)||(41524764-41524822)
[»] chr6 (2 HSPs)
chr6 (134-248)||(14675143-14675257)
chr6 (17-72)||(14675026-14675081)
[»] chr4 (1 HSPs)
chr4 (20-79)||(16591879-16591938)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 3175981 - 3176352
Alignment:
Q  1 agcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgat 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175981 agcaagggatggtgagtgatgttggtggcggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgat 3176080  T
Q  101 ggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176081 ggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttcta 3176180  T
Q  201 gctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggtttaagagaaggtaaccttgaga 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  3176181 gctcttcagctaaagctatgaaagaggttatttggagaaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgtaaccttgaaa 3176280  T
Q  301 gagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagctgatgtcca 372  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  3176281 gagagggagttgagtgatgttggtgtgttgagagagtgtgagagttgatctatttataagagctaatgtcca 3176352  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 3175799 - 3175875
Alignment:
Q  5 ggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 81  Q
    |||||||||||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||||||    
T  3175799 ggggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 3175875  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 3175613 - 3175691
Alignment:
Q  2 gcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaa 80  Q
    |||||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||    
T  3175613 gcaggggaaggtgagtgatgttggtggtggtgatgtgttggaggtttggcagggtgaggaggatgtaaaggagtgtgaa 3175691  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 3175904 - 3175998
Alignment:
Q  14 gagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 108  Q
    |||||||| || || || |||||||| || ||||| ||||| ||  ||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  3175904 gagtgatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatgagaaggagcaagggatggtgagtg 3175998  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 3175736 - 3175812
Alignment:
Q  32 tgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 108  Q
    |||||||| |||||||| ||||||||  || |||||||||||||||||||||| ||||| ||  | |||||||||||    
T  3175736 tgatgggttgggggttttgcagggtgacgatgatgtaaaggagtgtgaacatgggaaggggcgggggatggtgagtg 3175812  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 3175581 - 3175629
Alignment:
Q  60 gaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 108  Q
    ||||||||||||||||||||||||| ||||| ||| | || ||||||||    
T  3175581 gaggatgtaaaggagtgtgaacatgggaaggggcaggggaaggtgagtg 3175629  T

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Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 24541195 - 24541537
Alignment:
Q  17 tgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24541195 tgatgttggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggt 24541294  T
Q  117 gaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagc 216  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || ||    
T  24541295 gaggtgggctagctaatggtttatgaacaggtgacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgc 24541394  T
Q  217 tatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagt 315  Q
    ||||||||||||||||| ||||||||||||||  ||||  | |||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  24541395 tatgaaagaggttatttggagaaagagaaaaaacaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagt 24541494  T
Q  316 gatgttggtgtgttgagagagtgtgatagttgatctatttata 358  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  24541495 gatgttgatgtgttgagagagtgtgagagttgatctatttata 24541537  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 24540991 - 24541070
Alignment:
Q  2 gcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 81  Q
    ||||||||||||||||||||||||||| |||||||||| || ||||| |||||||| |||||||||||||||||||||||    
T  24540991 gcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 24541070  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 24540933 - 24541007
Alignment:
Q  34 atgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 108  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||||||| ||||| ||| | |||||||||||    
T  24540933 atgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcaggggatggtgagtg 24541007  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 24541114 - 24541190
Alignment:
Q  32 tgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 108  Q
    ||||| || |||||||| || |||||  ||||||||||||||| ||||||||| ||||| | | | |||||||||||    
T  24541114 tgatgagttgggggttttgctgggtgacgaggatgtaaaggagggtgaacatgggaaggcgtaggggatggtgagtg 24541190  T

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Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 20964058 - 20963741
Alignment:
Q  17 tgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggttgtggt 116  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20964058 tgatgctggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtggttgtggt 20963959  T
Q  117 gaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagc 216  Q
    |               ||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||  || ||    
T  20963958 g---------------tggtttatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgc 20963874  T
Q  217 tatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgag 314  Q
    ||||||||||||||||| ||||||||||||||  ||||| | |||||||||||||  |||||  ||||||||| | |||||||| ||||||||||| ||     
T  20963873 tatgaaagaggttatttggagaaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggat 20963775  T
Q  315 tgatgttggtgtgttgagagagtgtgatagttga 348  Q
    ||||||||||||||||||||||||||| ||||||    
T  20963774 tgatgttggtgtgttgagagagtgtgagagttga 20963741  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 20964262 - 20964186
Alignment:
Q  5 ggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 81  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||| || ||| |||||||||||||||||||    
T  20964262 ggggatggtgagtgatgttggtggtggtgatgggttggaggtttggcaggatgaggatgatgtaaaggagtgtgaac 20964186  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 20964157 - 20964081
Alignment:
Q  14 gagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaagg 90  Q
    |||||||| || || || |||||||| |||||||| ||||||||  ||||||||| ||||||||||||||| |||||    
T  20964157 gagtgatgatgatgatgatgatgggttgggggttttgcagggtgacgaggatgtataggagtgtgaacatgggaagg 20964081  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 20964323 - 20964249
Alignment:
Q  34 atgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 108  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||| ||| ||||| ||  | |||||||||||    
T  20964323 atgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaaaatgtgaaggggcgggggatggtgagtg 20964249  T

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Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 101 - 364
Target Start/End: Original strand, 41525197 - 41525460
Alignment:
Q  101 ggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttcta 200  Q
    ||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||    
T  41525197 ggtgagtggctgtggtgaggtgggttagccaatggtttatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttcta 41525295  T
Q  201 gctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgag 299  Q
    |||||||||| || |||||||| |||||||||| ||| ||||||||||   ||||||| |||||||||||||||||| |||||||||| | ||| ||||     
T  41525296 gctcttcagcaaatgctatgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaa 41525395  T
Q  300 agagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagct 364  Q
    |||||||||||  ||| ||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  41525396 agagagggagagaagtaatgttggtgggttgagagagtgtgagagttgatctatttataggagct 41525460  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41524578 - 41524658
Alignment:
Q  1 agcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 81  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||| | |||||  |||||||||||||||||||||||    
T  41524578 agcaggggatggtgagtggtgttggtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaac 41524658  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41524922 - 41525002
Alignment:
Q  1 agcaggggatggtgagtgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 81  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||| | | |||   ||||||||||||||||||||||    
T  41524922 agcaggggatggtgagtggtgttggtggtggtgatgggttggaggtttggtatggtaaagaggatgtaaaggagtgtgaac 41525002  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 41524863 - 41524941
Alignment:
Q  32 tgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtggt 110  Q
    |||||||| |||||||| ||||||||  |||||| ||||||||| |||||||| ||||| ||| | |||||||||||||    
T  41524863 tgatgggttgggggttttgcagggtgacgaggatataaaggagtatgaacatgggaaggagcaggggatggtgagtggt 41524941  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 41524764 - 41524822
Alignment:
Q  23 tggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 81  Q
    ||||||||||||||||| || ||||| | |||||  |||||||||||||||||||||||    
T  41524764 tggtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaac 41524822  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 14675143 - 14675257
Alignment:
Q  134 ggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttattt 233  Q
    |||||||| | ||||||||| |||||||||||||||||  ||| |||||||||||||| |||||| |||||||| || ||  | | ||||||||||||||    
T  14675143 ggtttatgcaccggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttattt 14675242  T
Q  234 cgagaaagagaaaaa 248  Q
     ||| ||||||||||    
T  14675243 ggagtaagagaaaaa 14675257  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 14675026 - 14675081
Alignment:
Q  17 tgatgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaagg 72  Q
    |||||||||||||||||||||||  |||||||||||||||| || ||| |||||||    
T  14675026 tgatgttggtggtggtgatgggttaggggtttagcagggtgaggtggaggtaaagg 14675081  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 16591938 - 16591879
Alignment:
Q  20 tgttggtggtggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtga 79  Q
    ||||||||||||||| |||| || |||||||||||||| | ||| |||||||||||||||    
T  16591938 tgttggtggtggtgacgggttggaggtttagcagggtgagaagggtgtaaaggagtgtga 16591879  T

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