View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_low_19 (Length: 292)

Name: NF7293_low_19
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_low_19
NF7293_low_19
[»] chr7 (18 HSPs)
chr7 (1-292)||(661039-661331)
chr7 (1-98)||(22088209-22088306)
chr7 (149-186)||(22080390-22080427)
chr7 (1-93)||(22063263-22063355)
chr7 (1-93)||(22069732-22069824)
chr7 (1-93)||(22080477-22080569)
chr7 (219-251)||(36254805-36254837)
chr7 (135-186)||(20338458-20338509)
chr7 (206-252)||(18325698-18325744)
chr7 (137-187)||(20351628-20351678)
chr7 (207-248)||(20495208-20495249)
chr7 (149-186)||(22063176-22063213)
chr7 (149-186)||(22069645-22069682)
chr7 (149-182)||(22088131-22088164)
chr7 (54-94)||(15572347-15572387)
chr7 (202-254)||(18515441-18515493)
chr7 (135-187)||(20126623-20126675)
chr7 (219-251)||(36262480-36262512)
[»] chr4 (2 HSPs)
chr4 (135-189)||(2910531-2910585)
chr4 (219-251)||(19356934-19356966)
[»] chr1 (1 HSPs)
chr1 (149-254)||(15960670-15960778)
[»] chr5 (3 HSPs)
chr5 (219-251)||(29598130-29598162)
chr5 (219-251)||(29641810-29641842)
chr5 (219-251)||(29821190-29821222)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 661039 - 661331
Alignment:
Q  1 aacattatcgcccaaaatgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttgaga 100  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  661039 aacattatcgcctaaattgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttgaga 661138  T
Q  101 ttagaatagtgaactagaccgtcaacacgacaagaccctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacatttcgtatccgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  661139 ttagaatagtgaactagaccgtcaacacgacaagaccctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacatttggtatccgt 661238  T
Q  201 tggtgaaagaaaaaccttgcaaacaaagcaatccattgcaagaaccaacaatatgggggcaatatttg-gagcaagttgatagtaaggatctt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  661239 tggtgaaagaaaaaccttgcaaacaaagcaatccattgcaagaaccaacaatatggcggcaatatttgtcagcaagttgatagtaaggatctt 661331  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 22088306 - 22088209
Alignment:
Q  1 aacattatcgcccaaaatgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaatttga 98  Q
    ||||||| |||||||| | |||| |||||| ||||||||||| |||  ||| ||||||||||||||| | || |||||| ||||||||||||| ||||    
T  22088306 aacattaacgcccaaactaaaaactcttacatttgttgtctctggagtgaaatacaccaccttataagtttctgttgaattatcataaccaaacttga 22088209  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 22080427 - 22080390
Alignment:
Q  149 gatattgtccttgtggccgggttccaaaaacgaagcca 186  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22080427 gatattgtccttgtggctgggttccaaaaacgaagcca 22080390  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22063355 - 22063263
Alignment:
Q  1 aacattatcgcccaaaatgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaa 93  Q
    ||||||| |||||||| | |||| |||||| ||||||||||   ||  ||| ||||||||||||||| | || |||||| |||||||||||||    
T  22063355 aacattaacgcccaaactaaaaactcttacatttgttgtctttcgagtgaaatacaccaccttataagtttctgttgaattatcataaccaaa 22063263  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22069824 - 22069732
Alignment:
Q  1 aacattatcgcccaaaatgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaa 93  Q
    ||||||| |||||||| | |||| |||||| ||||||||||   ||  ||| ||||||||||||||| | || |||||| |||||||||||||    
T  22069824 aacattaacgcccaaactaaaaactcttacatttgttgtctttcgagtgaaatacaccaccttataagtttctgttgaattatcataaccaaa 22069732  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22080569 - 22080477
Alignment:
Q  1 aacattatcgcccaaaatgaaaattcttacgtttgttgtctccggaaggaagtacaccaccttataaatgtcggttgaactatcataaccaaa 93  Q
    |||||| | ||| ||| |||||| ||||||||||||||| |  |||  ||| ||||||||||||||| | || |||||| |||||||||||||    
T  22080569 aacattgttgcctaaactgaaaactcttacgtttgttgtttttggagtgaaatacaccaccttataagtttctgttgaattatcataaccaaa 22080477  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 36254837 - 36254805
Alignment:
Q  219 gcaaacaaagcaatccattgcaagaaccaacaa 251  Q
    |||||||||||||||||||||||||||||||||    
T  36254837 gcaaacaaagcaatccattgcaagaaccaacaa 36254805  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 20338509 - 20338458
Alignment:
Q  135 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagcca 186  Q
    |||||| ||||  ||||||| |||||||||| ||||||||||||||||||||    
T  20338509 accctaattttgcagatattttccttgtggcagggttccaaaaacgaagcca 20338458  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 18325744 - 18325698
Alignment:
Q  206 aaagaaaaaccttgcaaacaaagcaatccattgcaagaaccaacaat 252  Q
    |||||| ||||| |||| || ||||||||||||||||||||||||||    
T  18325744 aaagaataacctagcaagcatagcaatccattgcaagaaccaacaat 18325698  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 20351678 - 20351628
Alignment:
Q  137 cctagttttttagatattgtccttgtggccgggttccaaaaacgaagccac 187  Q
    |||||||||| ||||||||||||||||||  |||||||||| |||| ||||    
T  20351678 cctagtttttcagatattgtccttgtggcttggttccaaaagcgaatccac 20351628  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 20495249 - 20495208
Alignment:
Q  207 aagaaaaaccttgcaaacaaagcaatccattgcaagaaccaa 248  Q
    ||||||||||  ||||||||||| ||||||||||||||||||    
T  20495249 aagaaaaaccaagcaaacaaagccatccattgcaagaaccaa 20495208  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 22063213 - 22063176
Alignment:
Q  149 gatattgtccttgtggccgggttccaaaaacgaagcca 186  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22063213 gatattatccttgtggctgggttccaaaaacgaagcca 22063176  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 22069682 - 22069645
Alignment:
Q  149 gatattgtccttgtggccgggttccaaaaacgaagcca 186  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  22069682 gatattatccttgtggctgggttccaaaaacgaagcca 22069645  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 22088164 - 22088131
Alignment:
Q  149 gatattgtccttgtggccgggttccaaaaacgaa 182  Q
    |||||||||||||||||||||||||||| |||||    
T  22088164 gatattgtccttgtggccgggttccaaacacgaa 22088131  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 15572347 - 15572387
Alignment:
Q  54 acaccaccttataaatgtcggttgaactatcataaccaaat 94  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  15572347 acaccaccttgtaagtgtcggttgaattatcataaccaaat 15572387  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 18515441 - 18515493
Alignment:
Q  202 ggtgaaagaaaaaccttgcaaacaaagcaatccattgcaagaaccaacaatat 254  Q
    |||||||||| ||||  ||||||| | |||||||||||| |||||||||||||    
T  18515441 ggtgaaagaacaaccgagcaaacagaccaatccattgcatgaaccaacaatat 18515493  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 20126623 - 20126675
Alignment:
Q  135 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagccac 187  Q
    |||||| ||||| |||||||| || |||||| || ||||||||||||||||||    
T  20126623 accctaatttttcagatattgcccatgtggctggattccaaaaacgaagccac 20126675  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 36262512 - 36262480
Alignment:
Q  219 gcaaacaaagcaatccattgcaagaaccaacaa 251  Q
    ||||||||||||| |||||||||||||||||||    
T  36262512 gcaaacaaagcaacccattgcaagaaccaacaa 36262480  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 2910585 - 2910531
Alignment:
Q  135 accctagttttttagatattgtccttgtggccgggttccaaaaacgaagccacat 189  Q
    |||||| ||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  2910585 accctaatttattagatattgtccttgtggcagggttccacaaacggagccacat 2910531  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 19356966 - 19356934
Alignment:
Q  219 gcaaacaaagcaatccattgcaagaaccaacaa 251  Q
    |||||||||||||||||||||||||||||||||    
T  19356966 gcaaacaaagcaatccattgcaagaaccaacaa 19356934  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 15960778 - 15960670
Alignment:
Q  149 gatattgtccttgtggccgggttccaaaaacgaagccacatttcg---tatccgttggtgaaagaaaaaccttgcaaacaaagcaatccattgcaagaac 245  Q
    ||||||||||| || |||||||||||  |||||| |||||| ||    ||||| |||||| |||||   ||  |||| ||||||||||||||||||||||    
T  15960778 gatattgtcctcgttgccgggttccagcaacgaaaccacatctctctatatccattggtgtaagaatggccgagcaagcaaagcaatccattgcaagaac 15960679  T
Q  246 caacaatat 254  Q
    |||||||||    
T  15960678 caacaatat 15960670  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 29598130 - 29598162
Alignment:
Q  219 gcaaacaaagcaatccattgcaagaaccaacaa 251  Q
    |||||||||||||||||||||| ||||||||||    
T  29598130 gcaaacaaagcaatccattgcatgaaccaacaa 29598162  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 29641842 - 29641810
Alignment:
Q  219 gcaaacaaagcaatccattgcaagaaccaacaa 251  Q
    |||||||||||||||||||||| ||||||||||    
T  29641842 gcaaacaaagcaatccattgcatgaaccaacaa 29641810  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 29821190 - 29821222
Alignment:
Q  219 gcaaacaaagcaatccattgcaagaaccaacaa 251  Q
    |||||||||||||||||||||| ||||||||||    
T  29821190 gcaaacaaagcaatccattgcatgaaccaacaa 29821222  T

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