View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_low_20 (Length: 258)

Name: NF7293_low_20
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_low_20
NF7293_low_20
[»] chr5 (10 HSPs)
chr5 (21-243)||(39451097-39451319)
chr5 (21-243)||(39475603-39475825)
chr5 (24-238)||(39472136-39472344)
chr5 (24-243)||(39486565-39486784)
chr5 (35-187)||(39454750-39454899)
chr5 (24-179)||(39464451-39464603)
chr5 (24-185)||(39460350-39460508)
chr5 (129-243)||(39483462-39483576)
chr5 (23-189)||(39470664-39470827)
chr5 (131-243)||(39458150-39458259)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 39451097 - 39451319
Alignment:
Q  21 aatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgctt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451097 aatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgctt 39451196  T
Q  121 ccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39451197 ccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgt 39451296  T
Q  221 tgttgacatgttctgcaccacca 243  Q
    |||||||||||||||||||||||    
T  39451297 tgttgacatgttctgcaccacca 39451319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 39475603 - 39475825
Alignment:
Q  21 aatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgctt 120  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||    
T  39475603 aatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctctt 39475702  T
Q  121 ccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgt 220  Q
    ||||| | |||||||||||||||||||||||||| || |||||||| || || |||||||||||| ||| |||| || |||||  ||| ||| || ||||    
T  39475703 ccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgt 39475802  T
Q  221 tgttgacatgttctgcaccacca 243  Q
    |||||||||||||||||||||||    
T  39475803 tgttgacatgttctgcaccacca 39475825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 39472136 - 39472344
Alignment:
Q  24 gatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttcca 123  Q
    |||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||  ||||||| | ||||||||  ||| ||||    | || |    
T  39472136 gatgtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggt---ccctcta 39472232  T
Q  124 tgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgt 223  Q
    || |||| ||||||||||||||||||||||| ||||||||||  || |||||||||| |||     ||  ||||||||||||||||||| |  | |||||    
T  39472233 tgactgcgctcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattac---cagatcagaaaatggagtccttgccgcttttgttgt 39472329  T
Q  224 tgacatgttctgcac 238  Q
    |||||||||||||||    
T  39472330 tgacatgttctgcac 39472344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 39486565 - 39486784
Alignment:
Q  24 gatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttcca 123  Q
    |||||| |||| ||||||||||| || || ||||||||| |  |||||||||||||||||  ||||||||| ||||||||| | ||| |||| |    ||    
T  39486565 gatgtctacacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgt---ca 39486661  T
Q  124 tgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggaga---aaatggagtccttgccaccatcgt 220  Q
    ||   |||||||| ||||||||||||||||| ||||||||||| || || |||||||||||| ||| |||| |   |  ||||  ||||||| || ||||    
T  39486662 tgaacgctctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgt 39486761  T
Q  221 tgttgacatgttctgcaccacca 243  Q
    |||||||||||||||||||||||    
T  39486762 tgttgacatgttctgcaccacca 39486784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 39454750 - 39454899
Alignment:
Q  35 taaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctc 134  Q
    |||||| ||||| ||||| |||||  ||  |||||||||||||||||||   |||||||| |||||||| ||||||| || |   |||||| | |||| |    
T  39454750 taaatctcttccaatctccgattcaatccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcc---tccatgtccgctcac 39454846  T
Q  135 ctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactgg 187  Q
    || ||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  39454847 cttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactgg 39454899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 39464603 - 39464451
Alignment:
Q  24 gatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttcca 123  Q
    |||||| ||||||||||| |||| || || |||||||| ||  |||||||||||||||||||||||||||| | || | |  ||||||||| ||||   |    
T  39464603 gatgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgct---a 39464507  T
Q  124 tgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctc 179  Q
    ||   |||||||| || ||||| |||||||| |||||||||||||| |||||||||    
T  39464506 tgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctc 39464451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 39460350 - 39460508
Alignment:
Q  24 gatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttcca 123  Q
    ||||| ||||||||||| ||||| |  || ||||||||| ||||||||||||||||||||||||||||||| ||||||| | | |||  ||   |    |    
T  39460350 gatgttaacactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaactt---ccagaa 39460446  T
Q  124 tgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactact 185  Q
    ||   ||| ||||||||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  39460447 tgatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactact 39460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 39483462 - 39483576
Alignment:
Q  129 gctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgaca 228  Q
    |||||||| |||||||||||||||||  | | |||||| || || |||||||||||| ||| |||| || |||||  |||  || || ||||||||||||    
T  39483462 gctctccttgaagctcagaaaccaaacataatacaagctgtctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgaca 39483561  T
Q  229 tgttctgcaccacca 243  Q
    |||||||||||||||    
T  39483562 tgttctgcaccacca 39483576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 39470827 - 39470664
Alignment:
Q  23 tgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttcc 122  Q
    ||||||| || |||||||| |||| ||||| ||||||||| |  ||||||||||||||||||||||| |||  |||| | |  |||||||||  | |       
T  39470827 tgatgtctacgctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggat--- 39470731  T
Q  123 atgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggag 189  Q
    |||   ||||||||||||||||| ||| |||| |||||||||||  | || ||||||||||||||||    
T  39470730 atgaacgctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggag 39470664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 39458259 - 39458150
Alignment:
Q  131 tctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgacatg 230  Q
    ||||||| |||||||||||||||| |||||| ||||||| || ||||||||||    || |  ||||||||||||||| ||  |  || |||||||||||    
T  39458259 tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcacta---aagcaccagaaaatggagtcctagctgcattcattgttgacatg 39458163  T
Q  231 ttctgcaccacca 243  Q
    |||||||||||||    
T  39458162 ttctgcaccacca 39458150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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