View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_low_23 (Length: 251)
Name: NF7293_low_23
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_23 |
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| [»] scaffold0209 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 9671 - 9915
Alignment:
| Q |
1 |
ctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9671 |
ctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaaaca |
9770 |
T |
|
| Q |
101 |
tgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgtgaactttctgaaagcttatgcca |
197 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9771 |
tggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgtgaactttctgaaagcttatgcca |
9870 |
T |
|
| Q |
198 |
acttgtttaagctttgttgcagtccttggcttcgaacatattctt |
242 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
9871 |
acttgtttaagctttgttgcagtccttggcttcaaacattttctt |
9915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 23125 - 23369
Alignment:
| Q |
1 |
ctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23125 |
ctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaaaca |
23224 |
T |
|
| Q |
101 |
tgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgtgaactttctgaaagcttatgcca |
197 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23225 |
tggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgtgaactttctgaaagcttatgcca |
23324 |
T |
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| Q |
198 |
acttgtttaagctttgttgcagtccttggcttcgaacatattctt |
242 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
23325 |
acttgtttaagctttgttgcagtccttggcttcaaacattttctt |
23369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 178515 - 178285
Alignment:
| Q |
6 |
tagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttga--------- |
96 |
Q |
| |
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|||||||||||||| |||| || ||||| |||||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||||| | |
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| T |
178515 |
tagtgacattgctcgtaagcgattaggtttctaagaacacattcagttgtatggtctacttttaactgtgggaactgaaatctagctttaacacacttgc |
178416 |
T |
|
| Q |
97 |
aacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgtgaactttctgaaagcttat |
193 |
Q |
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|||||| ||||||||||||||| | ||||||||| || || || ||||||| ||| ||||||||||||| ||| ||| ||||| |||| ||||||||| |
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| T |
178415 |
aacatggtaaacaacctaaacataaaaaccaactcaacaaagggtttttctcaaacttaatgtcaagtaaggatctgttatgaaccttctcaaagcttat |
178316 |
T |
|
| Q |
194 |
gccaacttgtttaagctttgttgcagtcctt |
224 |
Q |
| |
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||| ||| || | |||||||||| ||||| |
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| T |
178315 |
accagcttcattcaactttgttgcactcctt |
178285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 115272 - 115505
Alignment:
| Q |
3 |
ggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaa----- |
97 |
Q |
| |
|
||||||||||| ||||||||||| | | |||||| | |||||||||||| | ||| || ||||| || || |||||||||||| |||||||||| |
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| T |
115272 |
ggatagtgacactgctcaaaagcaactatgttcctcaaaacacattcggtcgcatgatctacttttaactgtgggaatagaaatctagctttgaagcact |
115371 |
T |
|
| Q |
98 |
----acatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaag---taatcggttgtgaactttctgaaagct |
190 |
Q |
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||| | ||||||||||||||||||||||||||| || || || ||||||| ||| || |||||||| | ||| ||| ||||| |||| |||||| |
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| T |
115372 |
tgcaacacggtaaacaacctaaacaaagaaaccaactcaacaaaggttttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaaagct |
115471 |
T |
|
| Q |
191 |
tatgccaacttgtttaagctttgttgcagtcctt |
224 |
Q |
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||| ||| ||| || | |||||||||||||||| |
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| T |
115472 |
tataccagcttcattcaactttgttgcagtcctt |
115505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 106551 - 106618
Alignment:
| Q |
9 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagg |
76 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||| ||||| |||| ||||| |||||||| |
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| T |
106551 |
tgacattgttccaaagcaatgaggttcctaagaacacattcagttgtttggtgtactttgaattgagg |
106618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 143294 - 143245
Alignment:
| Q |
5 |
atagtgacattgctcaaaagccatgaggttcctaagaacacattcggttg |
54 |
Q |
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|||||||||||| ||||| || || |||||||||||||||||||| |||| |
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| T |
143294 |
atagtgacattgttcaaatgcgattaggttcctaagaacacattctgttg |
143245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 607195 - 607094
Alignment:
| Q |
1 |
ctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaaaca |
100 |
Q |
| |
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||||||| ||||| ||||||||||| || || |||||||||| | ||| |||| |||| ||||| ||||| ||||| |||||| |||||||||| || |
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| T |
607195 |
ctggataatgacactgctcaaaagcaattagattcctaagaatgctttctgttgagtggtttacttttaattgtgggaacagaaatctagctttgaagca |
607096 |
T |
|
| Q |
101 |
tg |
102 |
Q |
| |
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|| |
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|
| T |
607095 |
tg |
607094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 298674 - 298613
Alignment:
| Q |
9 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaa |
70 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||| |||| ||||| |||||||| |
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|
| T |
298674 |
tgacattgttcaaacgcgatgaggttcctaagaacacattcagttgcttggtctactttcaa |
298613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 45958368 - 45958433
Alignment:
| Q |
5 |
atagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaa |
70 |
Q |
| |
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|||||||||||| ||| | || |||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
45958368 |
atagtgacattgttcacacgcgatgaggttcctaagaacacattatgttgcttggtctactttcaa |
45958433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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