View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_low_24 (Length: 250)
Name: NF7293_low_24
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 27821836 - 27821962
Alignment:
| Q |
1 |
cctttgtcagactaatttccgccggag-ttatagctagccacttttagtgggtttccactctcaactacattttttcgtccatattaatacttaagtaga |
99 |
Q |
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| T |
27821836 |
cctttgtcagactaatttccgccggagattatagctagccacttttagtgggtttccactctcaactacattttttcgtccatattaatacttaagtaga |
27821935 |
T |
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| Q |
100 |
tacatatgtatgaaataacatccgttg |
126 |
Q |
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| T |
27821936 |
tacatatgtatgaaataacatccgttg |
27821962 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 27822011 - 27822083
Alignment:
| Q |
175 |
gtagatttgagttcaaccataaatagtgtaccatatttggtctaacactatattatttgatctctgctactcc |
247 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
27822011 |
gtagatttgagttcaaccataaaaagtgtaccatatttggtctaacactatattatttgatctttgttactcc |
27822083 |
T |
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