View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7293_low_27 (Length: 240)
Name: NF7293_low_27
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_27 |
 | |
|
| [»] scaffold0209 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0209 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9693 - 9471
Alignment:
| Q |
1 |
ttttgagcaatgtcactatccagacaagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9693 |
ttttgagcaatgtcactatccagacgagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtc |
9594 |
T |
|
| Q |
101 |
gagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacagtctatgcaaacatattgtgatgaattcatcgtgttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9593 |
gagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacggtctatgcaaacatattgtgatgaattcatcgtgttatt |
9494 |
T |
|
| Q |
201 |
tccaacttatggaggatcttgat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9493 |
tccaacttatggaggatcttgat |
9471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23147 - 22925
Alignment:
| Q |
1 |
ttttgagcaatgtcactatccagacaagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23147 |
ttttgagcaatgtcactatccagacgagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtc |
23048 |
T |
|
| Q |
101 |
gagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacagtctatgcaaacatattgtgatgaattcatcgtgttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23047 |
gagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacggtctatgcaaacatattgtgatgaattcatcgtgttatt |
22948 |
T |
|
| Q |
201 |
tccaacttatggaggatcttgat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22947 |
tccaacttatggaggatcttgat |
22925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 607173 - 607392
Alignment:
| Q |
1 |
ttttgagcaatgtcactatccagacaagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtc |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
607173 |
ttttgagcagtgtcattatccagacaagccctacatttgcaattatgtttctttgcttgattctcttattgacaccaaagatgatgcagagttgttggtt |
607272 |
T |
|
| Q |
101 |
gagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacagtctatgcaaacatattgtgatgaattcatcgtgttatt |
200 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||||| ||| |||||||| || | ||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
607273 |
gagaaagatatgattgtgcatgaactaggaagccacgaggaattaacgagtcttgttatcaatttatccaaacatgttgtgacgaattcatcgtgttatt |
607372 |
T |
|
| Q |
201 |
tccaacttatggaggatctt |
220 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
607373 |
accaacttatggaagatctt |
607392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 115292 - 115073
Alignment:
| Q |
1 |
ttttgagcaatgtcactatccagacaagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtc |
100 |
Q |
| |
|
||||||||| ||||||||||| || |||| || ||||| || ||||||||||| |||||||||||||||||||| |||| || ||||||||| | || |
|
|
| T |
115292 |
ttttgagcagtgtcactatcctgatgagccttacatttgcaattatgtttctttgattgattctcttattcacaccgaagaagacgcagagttgctagtt |
115193 |
T |
|
| Q |
101 |
gagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacagtctatgcaaacatattgtgatgaattcatcgtgttatt |
200 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||| | | |||||||||| ||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
115192 |
gagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaaattcgtcgtgttatt |
115093 |
T |
|
| Q |
201 |
tccaacttatggaggatctt |
220 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
115092 |
accaacttatggaagatctt |
115073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 178502 - 178717
Alignment:
| Q |
5 |
gagcaatgtcactatccagacaagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtcgaga |
104 |
Q |
| |
|
|||||||||||||| || ||| |||| || ||||| || ||||||||||| |||||||||||||||| ||||||||||||| ||||| | | || |||| |
|
|
| T |
178502 |
gagcaatgtcactaccctgacgagccttacatttgcaattatgtttctttgattgattctcttattcaaaccaaagatgatgtagagtggcttgttgaga |
178601 |
T |
|
| Q |
105 |
aagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacagtctatgcaaacatattgtgatgaattcatcgtgttatttcca |
204 |
Q |
| |
|
||||| | | ||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||| ||||||| ||| |
|
|
| T |
178602 |
aagaaattgtggtgcacgaactgggaagcgacgaggaattgacgacacttgttaacagcctatgcaaacatgttgtgacaaattcatcatgttattacca |
178701 |
T |
|
| Q |
205 |
acttatggaggatctt |
220 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
178702 |
acttatagaagatctt |
178717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 152763 - 152909
Alignment:
| Q |
44 |
tatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtcgagaaagaagtgattgtgcacgaactaggaagtgacgaggaat |
143 |
Q |
| |
|
|||||||| || ||||||||||||| || || ||| ||||| || |||||||||||||| |||||||||||||| ||| | ||||||||| | ||| |
|
|
| T |
152763 |
tatgtttcacttgttgattctcttatacatacacaagttgatgttgatttgttggtcgagaaggaagtgattgtgcatgaaatgggaagtgacaaagaag |
152862 |
T |
|
| Q |
144 |
tggcgaatcttgttaacagtctatgcaaacatattgtgatgaattca |
190 |
Q |
| |
|
| || | |||||||| |||| ||||||||| |||| |||||||| |
|
|
| T |
152863 |
ttgcaatgcttgttaatggtctttgcaaacatgttgttgtgaattca |
152909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 37437954 - 37437899
Alignment:
| Q |
44 |
tatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggt |
99 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
37437954 |
tatgtttctttgattgattgtcttattcacaccaaagatgacgtggagttgttggt |
37437899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University