View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_low_28 (Length: 239)
Name: NF7293_low_28
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7487894 - 7488116
Alignment:
| Q |
1 |
aatggcgattgccgtatgaactgcttataatccaatgataaacggtgttaacaagagtgttatatctagacggacattggtgtgtgatcttagtacaagg |
100 |
Q |
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| T |
7487894 |
aatggcgattgccgtatgaactgcttataatccaatgataaacggtgttaacaagagtgttatatctggacggacattggcgtgtgatcttagtaaaagg |
7487993 |
T |
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| Q |
101 |
aagaggatgttcagttggggtccaagagttggtacttaaattataaacttccgctgatctcatagttccaccataactagtatggagtttcacaactttg |
200 |
Q |
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| T |
7487994 |
aagaggatgttcagttggggtccaagagttggtacttaaattataaacttccgctgatctcatagttccaccataactagtatggagtttcacaactttg |
7488093 |
T |
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| Q |
201 |
aagttgatgttgttgggatcatc |
223 |
Q |
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| T |
7488094 |
aagttgatgttgttgggatcatc |
7488116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 7873422 - 7873373
Alignment:
| Q |
28 |
taatccaatgataaacggtgttaacaagagtgttatatctagacggacat |
77 |
Q |
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| T |
7873422 |
taatccaatgataaacgccgttaacaagagtgttatatctagaaggacat |
7873373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 7495390 - 7495516
Alignment:
| Q |
28 |
taatccaatgataaacggtgttaacaagagtgttatatctagacggacattggtgtgtgatcttagtacaaggaagaggatgttcagttggggtccaaga |
127 |
Q |
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| T |
7495390 |
taatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcgtgatgatagttaaaggatgaggatgttgagtaggggtccataa |
7495489 |
T |
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| Q |
128 |
gttggtacttaaattataaacttccgc |
154 |
Q |
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| T |
7495490 |
tttagtacttagattataaacttccgc |
7495516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 6944128 - 6944049
Alignment:
| Q |
28 |
taatccaatgataaacggtgttaacaagagtgttatatctagacggacattggtgtgtgatcttagtacaaggaagagga |
107 |
Q |
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| T |
6944128 |
taatccaatgataaacgccgttaacaagagtgttatatttgaagggacattgacgtgtgatgatagtaaaaggaggagga |
6944049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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