View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_low_30 (Length: 231)

Name: NF7293_low_30
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_low_30
NF7293_low_30
[»] chr7 (16 HSPs)
chr7 (90-224)||(22069953-22070087)
chr7 (158-224)||(660941-661007)
chr7 (92-224)||(22080712-22080844)
chr7 (98-224)||(20351945-20352071)
chr7 (90-224)||(20361296-20361430)
chr7 (90-224)||(22063484-22063618)
chr7 (25-131)||(22088373-22088476)
chr7 (90-137)||(16839562-16839609)
chr7 (91-224)||(20126278-20126415)
chr7 (10-57)||(6865064-6865111)
chr7 (90-137)||(16846645-16846692)
chr7 (95-137)||(18326068-18326110)
chr7 (90-144)||(20140992-20141046)
chr7 (182-224)||(20361064-20361106)
chr7 (154-224)||(22100399-22100469)
chr7 (90-127)||(6864997-6865034)
[»] chr1 (1 HSPs)
chr1 (92-224)||(15961072-15961204)
[»] chr4 (2 HSPs)
chr4 (98-224)||(11971076-11971202)
chr4 (176-224)||(11981777-11981825)
[»] scaffold0867 (1 HSPs)
scaffold0867 (154-224)||(4763-4833)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 22069953 - 22070087
Alignment:
Q  90 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 189  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||| ||| || ||||  | |||||||  |||||| | ||| ||||||||||||||    
T  22069953 tactattgaggaatttgtgattatttcacttgatttgggtaccgagacacatactaagttgttgcctcctcacggtttcgatgaagtgccatttgttata 22070052  T
Q  190 ccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    |||||||||||||| ||||||||||||||||||||    
T  22070053 ccaaatctaagtgttttaaaggattgtctttgttt 22070087  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 661007 - 660941
Alignment:
Q  158 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  661007 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgttt 660941  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 22080712 - 22080844
Alignment:
Q  92 ctattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttatacc 191  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| ||| || |||| |  |||||||   |||||   ||| | || |||||||||||    
T  22080712 ctattgaacaatttatgattatttcacttgatttgggcaccgagacacatgctaagtttcggcctcctcacagtttcgttgaagttccctttgttatacc 22080811  T
Q  192 aaatctaagtgtgttaaaggattgtctttgttt 224  Q
    |||||||||| ||||||||||||||||||||||    
T  22080812 aaatctaagtatgttaaaggattgtctttgttt 22080844  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 20351945 - 20352071
Alignment:
Q  98 agcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttataccaaatct 197  Q
    ||||||||||||| ||||| ||| |||||| ||| || |||||||||  | |  | || |||| |||||||  |||| ||||| | ||| ||||| ||||    
T  20351945 agcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgcttttgccacctcaaggtttcacagaagtgccaatcgttgtaccatatct 20352044  T
Q  198 aagtgtgttaaaggattgtctttgttt 224  Q
    |||||||||||||||||||||||||||    
T  20352045 aagtgtgttaaaggattgtctttgttt 20352071  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 20361430 - 20361296
Alignment:
Q  90 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 189  Q
    ||||||| | ||||||||||| ||||| ||| ||||||||||||| |||| |||| |  |  | || |||| |||||||   ||| ||||| ||||| ||    
T  20361430 tactattcatcaatttgtgatcatttctcttgatttgggcaccgaaacgctttctcaacttttgccacctcaaggtttcacggaagtgccaattgttgta 20361331  T
Q  190 ccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    ||| ||||||||||| |||||||||||||||||||    
T  20361330 ccatatctaagtgtgctaaaggattgtctttgttt 20361296  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 22063484 - 22063618
Alignment:
Q  90 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 189  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||| |  || || | ||  | |||||||  ||||||   ||| | ||||||||||||    
T  22063484 tactattgggcaatttgtgattatttcacttgatttgggcactgaggcatatactaaattgtttcctcctcatggtttcagtgaagtaccatttgttata 22063583  T
Q  190 ccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    ||||| |||||||| ||||| |||| |||||||||    
T  22063584 ccaaaactaagtgtcttaaatgattatctttgttt 22063618  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 22088373 - 22088476
Alignment:
Q  25 ggtagttttaattggttggcaattcgcaattacaacgacgaggactacgaatgcaaggatattgatactattgagcaatttgtgattatttcacttaatt 124  Q
    |||||| |||||||||||||||||| ||||||||  |  || || ||  | ||||||| ||||   |||||||||||||||||||||||||||||| |||    
T  22088373 ggtagtgttaattggttggcaattcacaattacattggtgatgattataattgcaagggtatt---actattgagcaatttgtgattatttcacttgatt 22088469  T
Q  125 tgggcac 131  Q
    |||||||    
T  22088470 tgggcac 22088476  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 16839609 - 16839562
Alignment:
Q  90 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 137  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||    
T  16839609 tactgttgagcaatttgtgattatttcacttgatttgggcacggagac 16839562  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 20126415 - 20126278
Alignment:
Q  91 actattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgc----catttgtt 186  Q
    |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||| || | || || |||| |||||||   ||| | |    |  |||||    
T  20126415 actattcagcaatttgtgattatttcccttgacttgggcactgagacacattctcagcttctgccacctcaaggtttcactgaagtacgtagcgattgtt 20126316  T
Q  187 ataccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
     |||||||| |||||||||||||||| |||||||||||    
T  20126315 gtaccaaatataagtgtgttaaaggactgtctttgttt 20126278  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 6865111 - 6865064
Alignment:
Q  10 gttgttcatcttagtggtagttttaattggttggcaattcgcaattac 57  Q
    ||||| |||||| |||||||| ||| ||||||||||||||||||||||    
T  6865111 gttgtgcatcttggtggtagtgttacttggttggcaattcgcaattac 6865064  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 16846692 - 16846645
Alignment:
Q  90 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 137  Q
    |||| |||||||||||||||||||||| ||| |||||||||| |||||    
T  16846692 tactgttgagcaatttgtgattatttctcttgatttgggcacggagac 16846645  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 18326068 - 18326110
Alignment:
Q  95 ttgagcaatttgtgattatttcacttaatttgggcaccgagac 137  Q
    |||||||||||| ||||||||||||| |||||||||| |||||    
T  18326068 ttgagcaatttgcgattatttcacttgatttgggcacggagac 18326110  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 20141046 - 20140992
Alignment:
Q  90 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattct 144  Q
    |||| |||| |||||||||||| |||| ||| |||||||||||||||| ||||||    
T  20141046 tactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattct 20140992  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 20361064 - 20361106
Alignment:
Q  182 ttgttataccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||    
T  20361064 ttgttgtaccatatctaagtgtgttagaggattgtctttgttt 20361106  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 22100399 - 22100469
Alignment:
Q  154 cctcctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    |||||||  |||||| | ||| ||||| |||||||||| ||||||||||| ||||| |||| |||||||||    
T  22100399 cctcctcatggtttcaatgaagtgccaattgttatacctaatctaagtgtcttaaatgattatctttgttt 22100469  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 6865034 - 6864997
Alignment:
Q  90 tactattgagcaatttgtgattatttcacttaatttgg 127  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  6865034 tactattgagcaatttgagattatttcacttcatttgg 6864997  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 15961072 - 15961204
Alignment:
Q  92 ctattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttatacc 191  Q
    ||||||| || ||||||||| |||||||| |||||||||| ||||| ||| || ||||    ||||||  ||||||| | ||| | |||| ||||| |||    
T  15961072 ctattgaacattttgtgattgtttcacttgatttgggcactgagacacatactcagttggcacctcctaaaggtttcaatgaagttccatatgttaaacc 15961171  T
Q  192 aaatctaagtgtgttaaaggattgtctttgttt 224  Q
    ||||||||||||||||||  |||||||||||||    
T  15961172 aaatctaagtgtgttaaataattgtctttgttt 15961204  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 11971202 - 11971076
Alignment:
Q  98 agcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttataccaaatct 197  Q
    ||||||||||||||||||||||| |||| ||||| ||||   || || |||| |  ||||||| ||| ||  |  |  |||||||| |||| ||||||||    
T  11971202 agcaatttgtgattatttcacttgattttggcactgagaaatatactcagttgcgacctcctcaaggatttgatcaggtgccatttcttatgccaaatct 11971103  T
Q  198 aagtgtgttaaaggattgtctttgttt 224  Q
    ||| |||||| ||||||||||||||||    
T  11971102 aagcgtgttagaggattgtctttgttt 11971076  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 11981825 - 11981777
Alignment:
Q  176 tgccatttgttataccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    |||||||| || | |||||| ||||||||||| ||||||||||||||||    
T  11981825 tgccatttcttgtgccaaatgtaagtgtgttacaggattgtctttgttt 11981777  T

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Target: scaffold0867 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 4833 - 4763
Alignment:
Q  154 cctcctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgttt 224  Q
    |||||||  |||||| | ||| ||||| |||||||||| ||||||||||| ||||| |||| |||||||||    
T  4833 cctcctcatggtttcaatgaagtgccaattgttatacctaatctaagtgtcttaaatgattatctttgttt 4763  T

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