View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_low_34 (Length: 206)
Name: NF7293_low_34
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 7141950 - 7141782
Alignment:
| Q |
16 |
gacatcatatattgttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgattt |
115 |
Q |
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| T |
7141950 |
gacatcataaacagttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgattt |
7141851 |
T |
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| Q |
116 |
gggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtc |
184 |
Q |
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| T |
7141850 |
gggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtc |
7141782 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 7154704 - 7154556
Alignment:
| Q |
32 |
ggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaa |
131 |
Q |
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| T |
7154704 |
ggaatcaaacacaactcattttcccttccaactgccaatccaacattttcagtcatatccaaatcctcaggtttcatctgatttggtagttcccaattaa |
7154605 |
T |
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| Q |
132 |
agtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaa |
180 |
Q |
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| T |
7154604 |
aatgatatagtaataaagcaagaggaagcataacactagctataccaaa |
7154556 |
T |
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