View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_low_4 (Length: 613)
Name: NF7293_low_4
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 190 - 402
Target Start/End: Original strand, 13245727 - 13245939
Alignment:
| Q |
190 |
gatgtatttttgtgtgttctaatgtgttattactcaccttgctcaaaaggtattatctatcttaccacctaatctttgaaaatggaaagtggtcttctag |
289 |
Q |
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| T |
13245727 |
gatgtatttttgtgtgttctaatgtgttactactcaccttgctcaaatggtattatctatcttaccacctaatctttgaaaatggaaagtggtcttctag |
13245826 |
T |
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| Q |
290 |
gcaaaaatgataaatattctcctcaaaaactaatcaaccaacttaatcacaaaaggaaatttgactctcatttgaagtacaaggaacacattaaacatga |
389 |
Q |
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| T |
13245827 |
acaaaaatgataaatattctcctcaaaaactaatcaaccaacttaatcacaaaaggaaatttgactctcatttgaagtacaaggaacacattacacatga |
13245926 |
T |
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| Q |
390 |
gtgaagtaaacat |
402 |
Q |
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| T |
13245927 |
gtgaagtaaacat |
13245939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 466 - 598
Target Start/End: Original strand, 13245983 - 13246115
Alignment:
| Q |
466 |
ccccattttgaagttctaattaaatttaagtcctattttcatcatagatcgaaattcttcaaaatctacaaacccatctccattcttatcaaccccttta |
565 |
Q |
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| T |
13245983 |
ccccattttgaagttctaattaaatttaagtcctattttcatcatagatcgaaattcttcaaaatctacaaacccatctccattcttatcaaccccttta |
13246082 |
T |
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| Q |
566 |
atcatacgcttacaatcccttaaactacaattt |
598 |
Q |
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| T |
13246083 |
atcatacgcttacaatcccttaaactacaattt |
13246115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 13245538 - 13245660
Alignment:
| Q |
1 |
ctttagaaagttatgtcgaaaacaaattcgagattttggtaataacacttcacacattttggaatcaattaccgattaattcttatatggtcagaggagt |
100 |
Q |
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| T |
13245538 |
ctttagaaagttatgtcgaaaacaaattcgagattttagtaataatactttacacattttggaatcaattacgaattaattcttatatggttagaggagt |
13245637 |
T |
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| Q |
101 |
ttggatataccatttagacacac |
123 |
Q |
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| T |
13245638 |
ttggatacaccatttagacacac |
13245660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 502 - 576
Target Start/End: Complemental strand, 28146404 - 28146330
Alignment:
| Q |
502 |
tttcatcatagatcgaaattcttcaaaatctacaaacccatctccattcttatcaacccctttaatcatacgctt |
576 |
Q |
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|||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28146404 |
tttcatcatagacctaaattcttcataatccacaaacccatctccattcttatcaacccctttgatcatacgctt |
28146330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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