View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7293_low_5 (Length: 570)
Name: NF7293_low_5
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7293_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Complemental strand, 1330569 - 1330012
Alignment:
| Q |
13 |
aatattgctaatcaatgatgaataattttttactagttttctgaaaggggcaaagaaactaagaaagaaaaacaagtgtttcttaggagaggggttatca |
112 |
Q |
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| T |
1330569 |
aatattgctaatcaatgatgaataattttttactagttttctgaaaggggcaaagaaactaagaaagaaaaacaagtgtttcttaggagaggggatatca |
1330470 |
T |
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| Q |
113 |
cattaatcttcaaagttctaacaagacttgagaacaagcttttctaatgaaggtggataaaattgcctgccttggaatgaagaaaaagagttccaactaa |
212 |
Q |
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| T |
1330469 |
cattaatcttcaaagttctaacaagacttgagaacaagcttttctaatgaaggtggataaaattgcctgccttggaatgaagaaaaagagttccaactaa |
1330370 |
T |
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| Q |
213 |
taaaaaattattctagtcaacggtggtaattgccatagttctgttgatagcctcccatataggagttattactaccaggttgttgcttaagtgcagcatg |
312 |
Q |
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| T |
1330369 |
taaaaaattattctagtcaacggtggtaattgccatagttctgttgatagcctcccatataggagttattactaccaggttgttgcttaagtgcagcatg |
1330270 |
T |
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| Q |
313 |
tccttgtacgcgatccctttcatattgctgccaaatcagctgttcttcaactagtaacctttgcttcttctccatctctgacatttgaacgtaagacggt |
412 |
Q |
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| T |
1330269 |
tccttgtacgcgatccctttcatattgctgccaaatcagctgttcttcaactagtaacctttgcttcttctccatctctgacatttgaacgtaagacggc |
1330170 |
T |
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| Q |
413 |
ggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagtagaattaactccagttcctgatgttggtggtgctggcaatgctagcattgctg |
512 |
Q |
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| T |
1330169 |
ggtgcgatagccaatgaagctgcaaatggatctacatatcctgaagtagaattaactccagttcctgatgttggtggtgctggcaatgctagcattgctg |
1330070 |
T |
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| Q |
513 |
gccttccggctgaaccaagtgctacactgctagcacttcccctgcaaccatatcccac |
570 |
Q |
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| T |
1330069 |
gccttccggctgaaccaagtgctacactgctagcacttccactgccaccatatcccac |
1330012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 1925801 - 1925689
Alignment:
| Q |
333 |
catattgctgccaaatcagctgttcttcaactagtaacctttgcttcttctccatctctgacatttgaacgtaagacggtggtgcgatagccaatgaagc |
432 |
Q |
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| T |
1925801 |
catattgctgccaaattgcttgttcttcagctaatagcctttgtctcgtctccatctctgacatttgaacataagctggtggtgctacaagcattgatgc |
1925702 |
T |
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| Q |
433 |
tgcaaatggatct |
445 |
Q |
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| T |
1925701 |
tgcaaatggatct |
1925689 |
T |
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