View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7293_low_7 (Length: 511)

Name: NF7293_low_7
Description: NF7293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7293_low_7
NF7293_low_7
[»] chr1 (9 HSPs)
chr1 (13-415)||(40552307-40552709)
chr1 (415-506)||(40552094-40552185)
chr1 (13-54)||(48569435-48569476)
chr1 (13-53)||(10308360-10308400)
chr1 (13-53)||(46923664-46923704)
chr1 (20-55)||(33686711-33686746)
chr1 (20-53)||(18169181-18169214)
chr1 (13-54)||(30308264-30308305)
chr1 (13-53)||(23943678-23943718)
[»] chr4 (6 HSPs)
chr4 (13-57)||(54703520-54703564)
chr4 (13-54)||(21713325-21713366)
chr4 (13-57)||(31825889-31825933)
chr4 (13-55)||(21710697-21710739)
chr4 (20-54)||(49063138-49063172)
chr4 (11-56)||(51242736-51242781)
[»] chr8 (3 HSPs)
chr8 (13-54)||(15743349-15743390)
chr8 (13-53)||(35161494-35161534)
chr8 (13-53)||(43693725-43693765)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-52)||(256391-256430)
[»] chr7 (4 HSPs)
chr7 (20-55)||(39476413-39476448)
chr7 (14-52)||(4035313-4035351)
chr7 (12-53)||(18236718-18236759)
chr7 (20-52)||(23943807-23943839)
[»] chr2 (2 HSPs)
chr2 (13-52)||(34620042-34620081)
chr2 (13-56)||(41192543-41192586)
[»] chr3 (1 HSPs)
chr3 (14-55)||(39417955-39417996)
[»] chr6 (1 HSPs)
chr6 (13-57)||(5741563-5741607)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Complemental strand, 40552709 - 40552307
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttattcaatgtcgttaaggtcacgtagactttaaaattgtaggtgtaaaaaagaaacctc 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40552709 cagggcctgagcaaaatgtgcaggttgaagagcagaattcttattcaatgtccttaaggtcacatagactttaaaattgtaggtgtaaaaaagaaacctc 40552610  T
Q  113 aaaagtagattttgaaagaccaaaaggtataagcccatatgaaaatgcttcgttttcacctttggtcgttaccttgnnnnnnnctttgctgtgtaagtaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||||    
T  40552609 aaaagtagattttgaaagaccaaaaggtataagcccatatgaaaatgcttcgttttcacgtttggtcgttaccttgtttttttctttgctgtgtaagtaa 40552510  T
Q  213 taatggttttatgccgattcgcttattctcctgcaaaccatttatcttttccgaaataccctcccaaatacgccaaattaccttcgctgccactttctgc 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40552509 taatggttttatgccgattcgcttattctcctgcaagccatttatcttttccgaaataccctcccaaatacgccaaattaccttcgctgccactttctgc 40552410  T
Q  313 agcctggcgttattcaacgtcaacgatggaagctcctcccgaaggttaccgcaagaacgttggaatctgtctcatcaatgatcaaaagaaggttcaatct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40552409 agcctggcgttattcaacgtcaacgatggaagctcctcccgaaggttaccgcaagaacgttggaatctgtctcatcaataatcaaaagaaggttcaatct 40552310  T
Q  413 ctc 415  Q
    |||    
T  40552309 ctc 40552307  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 415 - 506
Target Start/End: Complemental strand, 40552185 - 40552094
Alignment:
Q  415 cacaacacatgtgattagattcagctacgttgttaatttaaattactactggtctgtcacatgtcagtgtcactgtcgtgtctgatgtccat 506  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  40552185 cacagcacatgtgattagattcagctacgttgttaatttaaattactactggtgtgtcacatgtcagtgtcactgtcgtgtctggtgtccat 40552094  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 48569435 - 48569476
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 54  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  48569435 cagggcgcgagcaaaatgtgcagggtgaagagcagaattctt 48569476  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 10308400 - 10308360
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 53  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  10308400 cagggcgcgagcaaaatgtgcagggtgaagagcagaattct 10308360  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 46923704 - 46923664
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 53  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  46923704 cagggcgcgagcaaaatgtgcagggtgaagagcagaattct 46923664  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 33686711 - 33686746
Alignment:
Q  20 cgagcaaaatgtgcaggttgaagagcagaattctta 55  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33686711 cgagcaaaatgtgcaggatgaagagcagaattctta 33686746  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 18169214 - 18169181
Alignment:
Q  20 cgagcaaaatgtgcaggttgaagagcagaattct 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  18169214 cgagcaaaatgtgcagggtgaagagcagaattct 18169181  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30308305 - 30308264
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 54  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  30308305 cagggcgcgagcaaaatgtgcagggtgaagagctgaattctt 30308264  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 23943678 - 23943718
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 53  Q
    |||||| | ||||||||||||||| ||||||||||||||||    
T  23943678 cagggcgcaagcaaaatgtgcagggtgaagagcagaattct 23943718  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 54703564 - 54703520
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttatt 57  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||    
T  54703564 cagggcgcgagcaaaatgtgcagggtgaagagcagaattcttatt 54703520  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 21713325 - 21713366
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 54  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  21713325 cagggcgcgagcaaaatgtgcagggtgaagagcagaattctt 21713366  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 31825889 - 31825933
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttatt 57  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||    
T  31825889 cagggcgcgagcaaaatgtgcagggtgaagagcagaattcctatt 31825933  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 21710739 - 21710697
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattctta 55  Q
    |||||| ||||||||||||||||| |||||||||| |||||||    
T  21710739 cagggcacgagcaaaatgtgcagggtgaagagcagtattctta 21710697  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 49063172 - 49063138
Alignment:
Q  20 cgagcaaaatgtgcaggttgaagagcagaattctt 54  Q
    |||||||||||||||||||||||||||| ||||||    
T  49063172 cgagcaaaatgtgcaggttgaagagcagtattctt 49063138  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 51242781 - 51242736
Alignment:
Q  11 cacagggcccgagcaaaatgtgcaggttgaagagcagaattcttat 56  Q
    |||||||| ||||||||||||| ||| |||| ||||||||||||||    
T  51242781 cacagggcgcgagcaaaatgtgtagggtgaaaagcagaattcttat 51242736  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 15743349 - 15743390
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 54  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  15743349 cagggcgcgagcaaaatgtgcagggtgaagagcagaattctt 15743390  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 35161534 - 35161494
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 53  Q
    |||||| ||||||||||||||||| ||||||| ||||||||    
T  35161534 cagggcgcgagcaaaatgtgcagggtgaagagtagaattct 35161494  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 43693725 - 43693765
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 53  Q
    |||||| ||||||||||||||||| ||||||||| ||||||    
T  43693725 cagggcgcgagcaaaatgtgcagggtgaagagcaaaattct 43693765  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 256430 - 256391
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattc 52  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  256430 cagggcctgagcaaaatgtgcagggtgaagagcagaattc 256391  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 39476448 - 39476413
Alignment:
Q  20 cgagcaaaatgtgcaggttgaagagcagaattctta 55  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39476448 cgagcaaaatgtgcagggtgaagagcagaattctta 39476413  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 4035313 - 4035351
Alignment:
Q  14 agggcccgagcaaaatgtgcaggttgaagagcagaattc 52  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  4035313 agggcgcgagcaaaatgtgcagggtgaagagcagaattc 4035351  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 18236759 - 18236718
Alignment:
Q  12 acagggcccgagcaaaatgtgcaggttgaagagcagaattct 53  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  18236759 acagggcgcgagcaaaatatgcaggatgaagagcagaattct 18236718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 23943807 - 23943839
Alignment:
Q  20 cgagcaaaatgtgcaggttgaagagcagaattc 52  Q
    ||||||||||||||||| |||||||||||||||    
T  23943807 cgagcaaaatgtgcagggtgaagagcagaattc 23943839  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 34620042 - 34620081
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattc 52  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  34620042 cagggcgcgagcaaaatgtgcagggtgaagagcagaattc 34620081  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 41192543 - 41192586
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttat 56  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||    
T  41192543 cagggcgcgaacaaaatgtgcagggtgaagagcagaattcttat 41192586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 39417955 - 39417996
Alignment:
Q  14 agggcccgagcaaaatgtgcaggttgaagagcagaattctta 55  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||    
T  39417955 agggcgcgagcaaaatgtggagggtgaagagcagaattctta 39417996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 5741563 - 5741607
Alignment:
Q  13 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttatt 57  Q
    |||||| ||||| ||| ||||||| ||||||||||||||||||||    
T  5741563 cagggcgcgagcgaaaagtgcagggtgaagagcagaattcttatt 5741607  T

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